[ nabia ]
[ aramo ]
[ Källkod: samblaster ]
Paket: samblaster (0.1.24-2build1)
Länkar för samblaster
Trisquelresurser:
Hämta källkodspaketet samblaster:
- [samblaster_0.1.24-2build1.dsc]
- [samblaster_0.1.24.orig.tar.gz]
- [samblaster_0.1.24-2build1.debian.tar.xz]
Ansvarig:
Original Maintainers:
- Debian Med Packaging Team (E-postarkiv)
- Steffen Moeller
Externa resurser:
- Hemsida [github.com]
Liknande paket:
marks duplicates, extracts discordant/split reads
Current "next-generation" sequencing technologies cannot tell what exact sequence they will be reading. They take what is available. And if some sequences are read very often, then this needs some extra biomedical thinking. The genome could for instance be duplicated.
samblaster is a fast and flexible program for marking duplicates in read-id grouped paired-end SAM files. It can also optionally output discordant read pairs and/or split read mappings to separate SAM files, and/or unmapped/clipped reads to a separate FASTQ file. When marking duplicates, samblaster will require approximately 20MB of memory per 1M read pairs.
Andra paket besläktade med samblaster
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- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
också ett virtuellt paket som tillhandahålls av libc6-udeb
- dep: libc6 (>= 2.8) [armhf]
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- dep: libgcc-s1 (>= 3.5) [armhf]
- GCC support library
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- dep: libstdc++6 (>= 5)
- GNU Standard C++ Library v3
Hämta samblaster
| Arkitektur | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|
| amd64 | 23,5 kbyte | 62 kbyte | [filförteckning] |
| armhf | 21,3 kbyte | 45 kbyte | [filförteckning] |