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[ Källkod: jellyfish  ]

Paket: python3-dna-jellyfish (2.3.0-12ubuntu2)

Länkar för python3-dna-jellyfish

python3-dna-jellyfish

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Hämta källkodspaketet jellyfish:

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Original Maintainers:

  • Debian Med Packaging Team (E-postarkiv)
  • Shaun Jackman
  • Andreas Tille
  • Michael R. Crusoe
  • Étienne Mollier

Externa resurser:

Liknande paket:

count k-mers in DNA sequences (Python bindings of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the Python bindings of jellyfish.

Andra paket besläktade med python3-dna-jellyfish

  • beror
  • rekommenderar
  • föreslår
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    också ett virtuellt paket som tillhandahålls av libc6-udeb
  • dep: libgcc-s1 (>= 3.3.1) [ej armhf]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libjellyfish-2.0-2 (>= 2.3.0)
    count k-mers in DNA sequences (dynamic library of jellyfish)
  • dep: libstdc++6 (>= 5.2) [armhf]
    GNU Standard C++ Library v3
    dep: libstdc++6 (>= 9) [ej armhf]
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
    dep: python3 (<< 3.11)
    dep: python3 (>= 3.10~)

Hämta python3-dna-jellyfish

Hämtningar för alla tillgängliga arkitekturer
Arkitektur Paketstorlek Installerad storlek Filer
amd64 52,4 kbyte168 kbyte [filförteckning]
arm64 50,9 kbyte164 kbyte [filförteckning]
armhf 54,7 kbyte137 kbyte [filförteckning]
ppc64el 63,9 kbyte236 kbyte [filförteckning]