パッケージ: python3-dna-jellyfish (2.3.0-12ubuntu2)
python3-dna-jellyfish に関するリンク
Trisquel の資源:
jellyfish ソースパッケージをダウンロード:
- [jellyfish_2.3.0-12ubuntu2.dsc]
- [jellyfish_2.3.0.orig.tar.gz]
- [jellyfish_2.3.0-12ubuntu2.debian.tar.xz]
メンテナ:
Original Maintainers:
- Debian Med Packaging Team (メールアーカイブ)
- Shaun Jackman
- Andreas Tille
- Michael R. Crusoe
- Étienne Mollier
外部の資源:
- ホームページ [github.com]
類似のパッケージ:
count k-mers in DNA sequences (Python bindings of jellyfish)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
This package contains the Python bindings of jellyfish.
その他の python3-dna-jellyfish 関連パッケージ
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
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- dep: libgcc-s1 (>= 3.3.1) [armhf 以外]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
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- dep: libjellyfish-2.0-2 (>= 2.3.0)
- count k-mers in DNA sequences (dynamic library of jellyfish)
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- dep: libstdc++6 (>= 5.2) [armhf]
- GNU Standard C++ Library v3
- dep: libstdc++6 (>= 9) [armhf 以外]
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.11)
- dep: python3 (>= 3.10~)