Paket: fastahack (1.0.0+dfsg-9)

Länkar för fastahack

Trisquelresurser:

Hämta källkodspaketet libfastahack:

Ansvarig:

Debian Med Packaging Team (E-postarkiv)

Original Maintainers:

Debian Med Packaging Team (E-postarkiv)
Andreas Tille

Externa resurser:

Hemsida [github.com]

Liknande paket:

utility for indexing and sequence extraction from FASTA files

fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.

Features:

 * FASTA index (.fai) generation for FASTA files
 * Sequence extraction
 * Subsequence extraction
 * Sequence statistics (currently only entropy is provided)

Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.

Andra paket besläktade med fastahack

beror

rekommenderar

föreslår

dep: libc6 (>= 2.34)

GNU C Library: Shared libraries
också ett virtuellt paket som tillhandahålls av libc6-udeb
dep: libdisorder0 (>= 0.0.2)

library for entropy measurement of byte streams
dep: libfastahack0 (>= 0.0+git20160702.bbc645f) [ej armhf]

library for indexing and sequence extraction from FASTA files (lib)

dep: libfastahack0 (>= 1.0.0+dfsg) [armhf]
dep: libgcc-s1 (>= 3.0) [ej armhf]

GCC support library

dep: libgcc-s1 (>= 3.5) [armhf]
dep: libstdc++6 (>= 5.2)

GNU Standard C++ Library v3

Hämta fastahack

Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	11,4 kbyte	44 kbyte	[filförteckning]
arm64	10,7 kbyte	40 kbyte	[filförteckning]
armhf	10,7 kbyte	35 kbyte	[filförteckning]
ppc64el	11,7 kbyte	84 kbyte	[filförteckning]

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