Package: fastahack (1.0.0+dfsg-9)
Links for fastahack
Trisquel Resources:
Download Source Package libfastahack:
- [libfastahack_1.0.0+dfsg-9.dsc]
- [libfastahack_1.0.0+dfsg.orig.tar.xz]
- [libfastahack_1.0.0+dfsg-9.debian.tar.xz]
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Andreas Tille
External Resources:
- Homepage [github.com]
Similar packages:
utility for indexing and sequence extraction from FASTA files
fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.
Features:
* FASTA index (.fai) generation for FASTA files * Sequence extraction * Subsequence extraction * Sequence statistics (currently only entropy is provided)
Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.
Other Packages Related to fastahack
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libdisorder0 (>= 0.0.2)
- library for entropy measurement of byte streams
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- dep: libfastahack0 (>= 0.0+git20160702.bbc645f) [not armhf]
- library for indexing and sequence extraction from FASTA files (lib)
- dep: libfastahack0 (>= 1.0.0+dfsg) [armhf]
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- dep: libgcc-s1 (>= 3.0) [not armhf]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
Download fastahack
Architecture | Package Size | Installed Size | Files |
---|---|---|---|
amd64 | 11.4 kB | 44 kB | [list of files] |
arm64 | 10.7 kB | 40 kB | [list of files] |
armhf | 10.7 kB | 35 kB | [list of files] |
ppc64el | 11.7 kB | 84 kB | [list of files] |