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[ Källkod: libfastahack  ]

Paket: fastahack (1.0.0+dfsg-9)

utility for indexing and sequence extraction from FASTA files

fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.

Features: 

 * FASTA index (.fai) generation for FASTA files
 * Sequence extraction
 * Subsequence extraction
 * Sequence statistics (currently only entropy is provided)

Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.

Andra paket besläktade med fastahack

  • beror
  • rekommenderar
  • föreslår
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    också ett virtuellt paket som tillhandahålls av libc6-udeb
  • dep: libdisorder0 (>= 0.0.2)
    library for entropy measurement of byte streams
  • dep: libfastahack0 (>= 1.0.0+dfsg)
    library for indexing and sequence extraction from FASTA files (lib)
  • dep: libgcc-s1 (>= 3.5)
    GCC support library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3

Hämta fastahack

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