Pakiet: fastahack (1.0.0+dfsg-9)

Odnośniki dla fastahack

Zasoby systemu Trisquel:

Pobieranie pakietu źródłowego libfastahack:

Opiekun:

Debian Med Packaging Team (Archiwum e-mail)

Original Maintainers:

Debian Med Packaging Team (Archiwum e-mail)
Andreas Tille

Zasoby zewnętrzne:

Strona internetowa [github.com]

Podobne pakiety:

utility for indexing and sequence extraction from FASTA files

fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.

Features:

 * FASTA index (.fai) generation for FASTA files
 * Sequence extraction
 * Subsequence extraction
 * Sequence statistics (currently only entropy is provided)

Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.

Inne pakiety związane z fastahack

wymaga

poleca

sugeruje

dep: libc6 (>= 2.34)

GNU C Library: Shared libraries
również pakiet wirtualny udostępniany przez libc6-udeb
dep: libdisorder0 (>= 0.0.2)

library for entropy measurement of byte streams
dep: libfastahack0 (>= 1.0.0+dfsg)

library for indexing and sequence extraction from FASTA files (lib)
dep: libgcc-s1 (>= 3.5)

GCC support library
dep: libstdc++6 (>= 5.2)

GNU Standard C++ Library v3

Pobieranie fastahack

Pobierz dla wszystkich dostępnych architektur
Architektura	Rozmiar pakietu	Rozmiar po instalacji	Pliki
armhf	10,7 KiB	35 KiB	[lista plików]

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