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[ Zdroj: pairtools  ]

Balík: python3-pairtools (0.3.0-3.2build1)

Framework to process sequencing data from a Hi-C experiment

Simple and fast command-line framework to process sequencing data from a Hi-C experiment.

Process pair-end sequence alignments and perform the following operations: 

  - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
    sequences of Hi-C DNA molecules
  - Sort .pairs files for downstream analyses
  - Detect, tag and remove PCR/optical duplicates
  - Generate extensive statistics of Hi-C datasets
  - Select Hi-C pairs given flexibly defined criteria
  - Restore .sam alignments from Hi-C pairs

Ostatné balíky súvisiace s balíkom python3-pairtools

  • závisí
  • odporúča
  • navrhuje
  • dep: cython3
    C-Extensions for Python 3
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    tiež virtuálny balík poskytovaný balíkom libc6-udeb
    dep: libc6 (>= 2.17) [arm64, ppc64el]
    dep: libc6 (>= 2.4) [armhf]
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
    dep: python3 (<< 3.11)
    dep: python3 (>= 3.10~)
  • dep: python3-click
    Wrapper around optparse for command line utilities - Python 3.x
  • dep: python3-nose
    test discovery and running for Python3 unittest
  • dep: python3-numpy (>= 1:1.20.0)
    Fast array facility to the Python 3 language
  • dep: python3-numpy-abi9
    virtuálny balík poskytovaný balíkom python3-numpy

Stiahnuť python3-pairtools

Stiahnuť pre všetky dostupné architektúry
Architektúra Veľkosť balíka Nainštalovaná veľkosť Súbory
amd64 130.0 kB441 kB [zoznam súborov]
arm64 123.5 kB404 kB [zoznam súborov]
armhf 118.4 kB338 kB [zoznam súborov]
ppc64el 146.8 kB540 kB [zoznam súborov]