Пакет: libfreecontact0v5 (1.0.21-12)
Ссылки для libfreecontact0v5
Ресурсы Trisquel:
Исходный код freecontact:
Сопровождающий:
Original Maintainers:
- Debian Med Packaging Team (Почтовый архив)
- Andreas Tille
Внешние ресурсы:
- Сайт [rostlab.org]
Подобные пакеты:
fast protein contact predictor library
FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).
FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.
A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.
This package contains the shared library implementing freecontact.
Другие пакеты, относящиеся к libfreecontact0v5
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- dep: libblas3
- Basic Linear Algebra Reference implementations, shared library
- или libblas.so.3
- виртуальный пакет, предоставляемый libatlas3-base, libblas3, libblis3-openmp, libblis3-pthread, libblis3-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
также виртуальный пакет, предоставляемый libc6-udeb
-
- dep: libgcc-s1 (>= 3.3.1)
- GCC support library
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- dep: libgfortran5 (>= 8)
- Runtime library for GNU Fortran applications
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
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- dep: liblapack3
- Library of linear algebra routines 3 - shared version
- или liblapack.so.3
- виртуальный пакет, предоставляемый libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
Загрузка libfreecontact0v5
| Архитектура | Размер пакета | В установленном виде | Файлы |
|---|---|---|---|
| amd64 | 67,5 Кб | 163 Кб | [список файлов] |