Pakiet: libfreecontact0v5 (1.0.21-12)
Odnośniki dla libfreecontact0v5
Zasoby systemu Trisquel:
- Install using apturl
- Entry at directory.fsf.org
- Raporty o błędach
- Changelog
- Informacje nt. praw autorskich
Pobieranie pakietu źródłowego freecontact:
Opiekun:
Original Maintainers:
- Debian Med Packaging Team (Archiwum e-mail)
- Andreas Tille
Zasoby zewnętrzne:
- Strona internetowa [rostlab.org]
Podobne pakiety:
fast protein contact predictor library
FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).
FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.
A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.
This package contains the shared library implementing freecontact.
Inne pakiety związane z libfreecontact0v5
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- dep: libblas3
- Basic Linear Algebra Reference implementations, shared library
- lub libblas.so.3
- pakiet wirtualny udostępniany przez libatlas3-base, libblas3, libblis3-openmp, libblis3-pthread, libblis3-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
również pakiet wirtualny udostępniany przez libc6-udeb
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- dep: libgcc-s1 (>= 3.3.1)
- GCC support library
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- dep: libgfortran5 (>= 8)
- Runtime library for GNU Fortran applications
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
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- dep: liblapack3
- Library of linear algebra routines 3 - shared version
- lub liblapack.so.3
- pakiet wirtualny udostępniany przez libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
Pobieranie libfreecontact0v5
| Architektura | Rozmiar pakietu | Rozmiar po instalacji | Pliki |
|---|---|---|---|
| amd64 | 67,5 KiB | 163 KiB | [lista plików] |