Pakiet: sortmerna (2.1-2)

Odnośniki dla sortmerna

Zasoby systemu Trisquel:

Pobieranie pakietu źródłowego sortmerna:

Opiekun:

Debian Med Packaging Team (Archiwum e-mail)

Original Maintainers:

Debian Med Packaging Team (Archiwum e-mail)
Tim Booth
Andreas Tille

Zasoby zewnętrzne:

Strona internetowa [bioinfo.lifl.fr]

Podobne pakiety:

tool for filtering, mapping and OTU-picking NGS reads

SortMeRNA is a biological sequence analysis tool for filtering, mapping and OTU-picking NGS reads. The core algorithm is based on approximate seeds and allows for fast and sensitive analyses of nucleotide sequences. The main application of SortMeRNA is filtering rRNA from metatranscriptomic data. Additional applications include OTU-picking and taxonomy assignation available through QIIME v1.9+ (http://qiime.org - v1.9.0-rc1). SortMeRNA takes as input a file of reads (fasta or fastq format) and one or multiple rRNA database file(s), and sorts apart rRNA and rejected reads into two files specified by the user. Optionally, it can provide high quality local alignments of rRNA reads against the rRNA database. SortMeRNA works with Illumina, 454, Ion Torrent and PacBio data, and can produce SAM and BLAST-like alignments.

Inne pakiety związane z sortmerna

wymaga

poleca

sugeruje

dep: libc6 (>= 2.14) [amd64]

GNU C Library: Shared libraries
również pakiet wirtualny udostępniany przez libc6-udeb

dep: libc6 (>= 2.4) [i386]
dep: libgcc1 (>= 1:3.0) [amd64]

GCC support library

dep: libgcc1 (>= 1:4.2) [i386]
dep: libgomp1 (>= 4.9)

GCC OpenMP (GOMP) support library
dep: libstdc++6 (>= 5.2)

GNU Standard C++ Library v3
dep: sse2-support [i386]

prevent installation on processors without required instructions

rec: python

interactive high-level object-oriented language (default version)

Pobieranie sortmerna

Pobierz dla wszystkich dostępnych architektur
Architektura	Rozmiar pakietu	Rozmiar po instalacji	Pliki
amd64	521,7 KiB	979 KiB	[lista plików]
i386	519,6 KiB	1013 KiB	[lista plików]

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