Package: sortmerna (2.1-2)
Links for sortmerna
Trisquel Resources:
Download Source Package sortmerna:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Tim Booth
- Andreas Tille
External Resources:
- Homepage [bioinfo.lifl.fr]
Similar packages:
tool for filtering, mapping and OTU-picking NGS reads
SortMeRNA is a biological sequence analysis tool for filtering, mapping and OTU-picking NGS reads. The core algorithm is based on approximate seeds and allows for fast and sensitive analyses of nucleotide sequences. The main application of SortMeRNA is filtering rRNA from metatranscriptomic data. Additional applications include OTU-picking and taxonomy assignation available through QIIME v1.9+ (http://qiime.org - v1.9.0-rc1). SortMeRNA takes as input a file of reads (fasta or fastq format) and one or multiple rRNA database file(s), and sorts apart rRNA and rejected reads into two files specified by the user. Optionally, it can provide high quality local alignments of rRNA reads against the rRNA database. SortMeRNA works with Illumina, 454, Ion Torrent and PacBio data, and can produce SAM and BLAST-like alignments.
Other Packages Related to sortmerna
|
|
|
-
- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.4) [i386]
-
- dep: libgcc1 (>= 1:3.0) [amd64]
- GCC support library
- dep: libgcc1 (>= 1:4.2) [i386]
-
- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) support library
-
- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
-
- dep: sse2-support [i386]
- prevent installation on processors without required instructions
-
- rec: python
- interactive high-level object-oriented language (default version)
Download sortmerna
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 521.7 kB | 979 kB | [list of files] |
| i386 | 519.6 kB | 1013 kB | [list of files] |