Pakiet: gasic (0.0.r19-7)

Odnośniki dla gasic

Zasoby systemu Trisquel:

Pobieranie pakietu źródłowego gasic:

Opiekun:

Debian Med Packaging Team (Archiwum e-mail)

Original Maintainers:

Debian Med Packaging Team (Archiwum e-mail)
Andreas Tille
Navid Fehrenbacher
Roland Fehrenbacher

Zasoby zewnętrzne:

Strona internetowa [sourceforge.net]

Podobne pakiety:

genome abundance similarity correction

One goal of sequencing based metagenomic analysis is the quantitative taxonomic assessment of microbial community compositions. However, the majority of approaches either quantify at low resolution (e.g. at phylum level) or have severe problems discerning highly similar species. Yet, accurate quantification on species level is desirable in applications such as metagenomic diagnostics or community comparison. GASiC is a method to correct read alignment results for the ambiguities imposed by similarities of genomes. It has superior performance over existing methods.

Inne pakiety związane z gasic

wymaga

poleca

sugeruje

dep: bowtie

Ultrafast memory-efficient short read aligner
dep: bowtie2

ultrafast memory-efficient short read aligner
dep: bwa

Burrows-Wheeler Aligner
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-biopython

Python3 library for bioinformatics
dep: python3-matplotlib

Python based plotting system in a style similar to Matlab (Python 3)
dep: python3-numpy

Fast array facility to the Python 3 language
dep: python3-pysam

interface for the SAM/BAM sequence alignment and mapping format (Python 3)
dep: python3-scipy

scientific tools for Python 3
dep: seqan-apps

C++ library for the analysis of biological sequences

sug: gasic-examples

genome abundance similarity correction (example data)

Pobieranie gasic

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