[ Bron: bowtie ]
Pakket: bowtie (1.2.2+dfsg-2)
Verwijzigingen voor bowtie
Trisquel bronnen:
Het bronpakket bowtie downloaden:
Beheerder:
Original Maintainers:
- Debian Med Packaging Team (Mailarchief)
- Steffen Moeller
- Andreas Tille
- Ognyan Kulev
- Stephan Struckmann
- Alexandre Mestiashvili
Externe bronnen:
- Homepage [bowtie-bio.sourceforge.net]
Vergelijkbare pakketten:
Ultrafast memory-efficient short read aligner
This package addresses the problem to interpret the results from the latest (2010) DNA sequencing technologies. Those will yield fairly short stretches and those cannot be interpreted directly. It is the challenge for tools like Bowtie to give a chromosomal location to the short stretches of DNA sequenced per run.
Bowtie aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end).
Andere aan bowtie gerelateerde pakketten
|
|
|
-
- dep: libc6 (>= 2.14)
- GNU C Library: Shared libraries
Ook een virtueel pakket geboden door: libc6-udeb
-
- dep: libgcc1 (>= 1:3.4)
- GCC support library
-
- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
-
- dep: libtbb2
- parallelism library for C++ - runtime files
-
- dep: python
- interactive high-level object-oriented language (default version)
-
- dep: zlib1g (>= 1:1.2.6)
- compression library - runtime
-
- sug: bowtie-examples
- Examples for bowtie, the ultrafast memory-efficient short read aligner