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パッケージ: topp (2.4.0-real-1ubuntu4)

set of programs implementing The OpenMS Proteomic Pipeline

TOPP (the OpenMS proteomic pipeline) is a pipeline for the analysis of HPLC/MS data. It consists of a set of numerous small applications that can be chained together to create analysis pipelines tailored for a specific problem. The applications make use of the libopenms library. Some examples of these applications are : 

  - TOPPView: A viewer for mass spectrometry data.
  - TOPPAS: An assistant for GUI-driven TOPP workflow design.
  - DTAExtractor: Extracts spectra of an MS run file to several
    files in DTA format.
  - FileConverter:  Converts between different MS file formats.
  - FileFilter: Extracts or manipulates portions of data from peak,
    feature or consensus feature files.
  - SpectraMerger: Merges spectra from an LC/MS map, either by
    precursor or by RT blocks.
  - BaselineFilter: Removes the baseline from profile spectra using a
    top-hat filter.
  - InternalCalibration: Applies an internal calibration.
  - PTModel: Trains a model for the prediction of proteotypic
    peptides from a training set.
  - RTPredict: Predicts retention times for peptides using a model
    trained by RTModel.
  - ExecutePipeline: Executes workflows created by TOPPAS.

その他の topp 関連パッケージ

  • 依存
  • 推奨
  • 提案
  • dep: libboost-regex1.71.0-icu66
    以下のパッケージによって提供される仮想パッケージです: libboost-regex1.71.0
  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
  • dep: libgcc-s1 (>= 3.0)
    GCC support library
  • dep: libgomp1 (>= 6)
    GCC OpenMP (GOMP) support library
  • dep: libopenms2.4.0 (= 2.4.0-real-1ubuntu4)
    library for LC/MS data management and analysis - runtime
  • dep: libqt5core5a (>= 5.12.2)
    Qt 5 core module
  • dep: libqt5gui5 (>= 5.8.0)
    Qt 5 GUI module
    または libqt5gui5-gles (>= 5.8.0)
    Qt 5 GUI module — OpenGL ES variant
  • dep: libqt5widgets5 (>= 5.7.0)
    Qt 5 widgets module
  • dep: libstdc++6 (>= 9)
    GNU Standard C++ Library v3
  • dep: libxerces-c3.2
    validating XML parser library for C++
  • dep: openms-common (= 2.4.0-real-1ubuntu4)
    package for LC/MS data management and analysis - shared data
  • sug: openms-doc
    package for LC/MS data management and analysis - documentation

topp のダウンロード

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