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パッケージ: r-cran-seurat (4.1.0-1)

r-cran-seurat に関するリンク

r-cran-seurat

Trisquel の資源:

r-cran-seurat ソースパッケージをダウンロード:

メンテナ:

Original Maintainers:

  • Debian R Packages Maintainers
  • Steffen Moeller

外部の資源:

類似のパッケージ:

Tools for Single Cell Genomics

A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, and Butler A and Satija R (2017) <doi:10.1101/164889> for more details.

その他の r-cran-seurat 関連パッケージ

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  • dep: libc6 (>= 2.32)
    GNU C Library: Shared libraries
    以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
  • dep: libgcc-s1 (>= 3.0)
    GCC support library
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3
  • dep: r-api-4.0
    以下のパッケージによって提供される仮想パッケージです: r-base-core
  • dep: r-base-core (>= 4.1.2-1ubuntu1)
    GNU R core of statistical computation and graphics system
  • dep: r-cran-cluster
    GNU R package for cluster analysis by Rousseeuw et al
  • dep: r-cran-cowplot
    GNU R streamlined plot theme and plot annotations for 'ggplot2'
  • dep: r-cran-fitdistrplus
    support fit of parametric distribution
  • dep: r-cran-future
    R package: A Future API for R
  • dep: r-cran-future.apply
    apply function to elements in parallel using futures
  • dep: r-cran-ggplot2 (>= 3.3.0)
    implementation of the Grammar of Graphics
  • dep: r-cran-ggrepel
    auto-position non-overlapping text labels in plots
  • dep: r-cran-ggridges
    Ridgeline Plots in 'ggplot2'
  • dep: r-cran-httr
    GNU R tools for working with URLs and HTTP
  • dep: r-cran-ica
    Independent Component Analysis
  • dep: r-cran-igraph
    GNU R network analysis and visualization
  • dep: r-cran-irlba
    GNU R fast truncated SVD, PCA and symmetric eigendecomposition
  • dep: r-cran-jsonlite
    Robust, High Performance JSON Parser and Generator for R
  • dep: r-cran-kernsmooth
    GNU R package for kernel smoothing and density estimation
  • dep: r-cran-leiden (>= 0.3.1)
    GNU R implementation of Leiden clustering algorithm
  • dep: r-cran-lmtest
    GNU R package for diagnostic checking in linear models
  • dep: r-cran-mass
    GNU R package of Venables and Ripley's MASS
  • dep: r-cran-matrixstats
    GNU R methods that apply to rows and columns of a matrix
  • dep: r-cran-miniui
    Shiny UI Widgets for Small Screens
  • dep: r-cran-patchwork
    GNU R the composer of plots
  • dep: r-cran-pbapply
    GNU R package providing progress bars for vectorized R functions
  • dep: r-cran-plotly (>= 4.9.0)
    create interactive web graphics via 'plotly.js' in GNU R
  • dep: r-cran-png
    GNU R package to read and write PNG images
  • dep: r-cran-rann
    Fast Nearest Neighbour Search Using L2 Metric
  • dep: r-cran-rcolorbrewer
    GNU R package providing suitable color palettes
  • dep: r-cran-rcpp (>= 1.0.7)
    GNU R package for Seamless R and C++ Integration
  • dep: r-cran-rcppannoy (>= 0.0.18)
    Rcpp bindings for Annoy (approximate nearest neighbors)
  • dep: r-cran-rcppeigen
    GNU R package for Eigen templated linear algebra
  • dep: r-cran-rcppprogress
    interruptible progress bar for C++ in GNU R packages
  • dep: r-cran-reticulate
    R interface to Python modules, classes, and functions
  • dep: r-cran-rlang
    Functions for Base Types and Core R and 'Tidyverse' Features
  • dep: r-cran-rocr
    GNU R package to prepare and display ROC curves
  • dep: r-cran-rtsne
    GNU R T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut
  • dep: r-cran-scales
    Scale functions for visualization
  • dep: r-cran-scattermore (>= 0.7)
    GNU R scatterplots with more points
  • dep: r-cran-sctransform (>= 0.3.3)
    Variance Stabilizing Transformations for Single Cell UMI Data
  • dep: r-cran-seuratobject (>= 4.0.4)
    GNU R data structures for single cell data
  • dep: r-cran-shiny
    GNU R web application framework
  • dep: r-cran-spatstat.core
    core functionality of the 'spatstat' family of GNU R packages
  • dep: r-cran-spatstat.geom
    GNU R geometrical functionality of the 'spatstat' package
  • dep: r-cran-tibble
    GNU R Simple Data Frames
  • dep: r-cran-uwot (>= 0.1.9)
    GNU R uniform manifold approximation and projection (UMAP)

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