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パッケージ: libseqlib-dev (1.2.0+dfsg-8build1)

C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev)

C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.

This package contains the header files and static library.

その他の libseqlib-dev 関連パッケージ

  • 依存
  • 推奨
  • 提案
  • dep: libbwa-dev
    Burrows-Wheeler Aligner source files
  • dep: libfml-dev
    development headers for libfml
  • dep: libhts-dev
    development files for the HTSlib
  • dep: libjsoncpp-dev
    library for reading and writing JSON for C++ (devel files)
  • dep: libseqlib2 (= 1.2.0+dfsg-8build1)
    C++ htslib/bwa-mem/fermi interface for interrogating sequence data
  • dep: libssw-dev
    Development headers and static libraries for libssw
    以下のパッケージによって提供される仮想パッケージでもあります: libssw-dev
  • dep: zlib1g-dev
    compression library - development

libseqlib-dev のダウンロード

すべての利用可能アーキテクチャ向けのダウンロード
アーキテクチャ パッケージサイズ インストールサイズ ファイル
amd64 223.0 kB1177 kB [ファイル一覧]
arm64 222.6 kB1162 kB [ファイル一覧]
armhf 224.1 kB983 kB [ファイル一覧]
ppc64el 258.1 kB1307 kB [ファイル一覧]