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Package: perm (0.4.0-8)

efficient mapping of short reads with periodic spaced seeds

PerM is a software package which was designed to perform highly efficient genome scale alignments for hundreds of millions of short reads produced by the ABI SOLiD and Illumina sequencing platforms. Today PerM is capable of providing full sensitivity for alignments within 4 mismatches for 50bp SOLID reads and 9 mismatches for 100bp Illumina reads.

Other Packages Related to perm

  • depends
  • recommends
  • suggests
  • dep: libbsd0 (>= 0.0)
    utility functions from BSD systems - shared library
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libgcc-s1 (>= 3.3.1) [arm64, ppc64el]
    GCC support library
    dep: libgcc-s1 (>= 3.4) [amd64]
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libgomp1 (>= 4.9)
    GCC OpenMP (GOMP) support library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3

Download perm

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 99.2 kB240 kB [list of files]
arm64 97.4 kB212 kB [list of files]
armhf 124.7 kB227 kB [list of files]
ppc64el 120.5 kB348 kB [list of files]