Package: maffilter-examples (1.3.1+dfsg-3)
Links for maffilter-examples
Trisquel Resources:
Download Source Package maffilter:
- [maffilter_1.3.1+dfsg-3.dsc]
- [maffilter_1.3.1+dfsg.orig.tar.xz]
- [maffilter_1.3.1+dfsg-3.debian.tar.xz]
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Andreas Tille
- Julien Dutheil
- Pranav Ballaney
External Resources:
- Homepage [jydu.github.io]
Similar packages:
process genome alignment in the Multiple Alignment Format (example data)
MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores.
* It can process the alignment to remove low-quality / ambiguous / masked regions. * It can export data into a single or multiple alignment file in format such as Fasta or Clustal. * It can read annotation data in GFF or GTF format, and extract the corresponding alignment. * It can perform sliding windows calculations. * It can reconstruct phylogeny/genealogy along the genome alignment. * It can compute population genetics statistics, such as site frequency spectrum, number of fixed/polymorphic sites, etc.
This package provides example data for maffilter.
Other Packages Related to maffilter-examples
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- enh: maffilter
- process genome alignment in the Multiple Alignment Format
Download maffilter-examples
Architecture | Package Size | Installed Size | Files |
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all | 77,417.5 kB | 78841 kB | [list of files] |