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Paket: sambamba (0.6.7-2)

tools for working with SAM/BAM data

Sambamba positions itself as a performant alternative to samtools and provides tools for

 * Powerful filtering with sambamba view --filter
 * Picard-like SAM header merging in the merge tool
 * Optional for operations on whole BAMs
 * Fast copying of a region to a new file with the slice tool
 * Duplicate marking/removal, using the Picard criteria

Andere Pakete mit Bezug zu sambamba

  • hängt ab von
  • empfiehlt
  • schlägt vor
  • dep: libbiod0
    bioinformatics library in D
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
    dep: libc6 (>= 2.3.6-6~) [i386]
  • dep: libhts2 (>= 1.4.1)
    C library for high-throughput sequencing data formats
  • dep: liblz4-1 (>= 0.0~r127)
    Fast LZ compression algorithm library - runtime
  • dep: libphobos2-ldc-shared78
    LLVM D Compiler - Phobos2 Standard library, shared objects
  • dep: libundead0
    Obsolete Phobos modules upgraded to work with the latest D

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Architektur Paketgröße Größe (installiert) Dateien
amd64 501,6 kB2362 kB [Liste der Dateien]
i386 521,9 kB2492 kB [Liste der Dateien]