Paket: stacks (2.60+dfsg-1)
Links für stacks
Trisquel-Ressourcen:
Quellcode-Paket stacks herunterladen:
Betreuer:
Original Maintainers:
- Debian Med Packaging Team (E-Mail-Archiv)
- Tim Booth
- Andreas Tille
Externe Ressourcen:
- Homepage [creskolab.uoregon.edu]
Ähnliche Pakete:
pipeline for building loci from short-read DNA sequences
Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.
Note that this package installs Stacks such that all commands must be run as: $ stacks <cmdname> <args>
Andere Pakete mit Bezug zu stacks
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
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- dep: libdbi-perl
- Perl Database Interface (DBI)
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- dep: libgcc-s1 (>= 3.3.1)
- GCC support library
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
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- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- dep: zlib1g (>= 1:1.2.6)
- compression library - runtime
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- rec: libspreadsheet-writeexcel-perl
- module to create Excel spreadsheets
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- rec: littler
- GNU R scripting and command-line front-end -- transition package
auch ein virtuelles Paket, bereitgestellt durch r-cran-littler
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- rec: python3
- interactive high-level object-oriented language (default python3 version)
stacks herunterladen
Architektur | Paketgröße | Größe (installiert) | Dateien |
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ppc64el | 1.095,0 kB | 4485 kB | [Liste der Dateien] |