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Pakket: stacks (2.60+dfsg-1)

Verwijzigingen voor stacks

stacks

Trisquel bronnen:

Het bronpakket stacks downloaden:

Beheerder:

Original Maintainers:

  • Debian Med Packaging Team (Mailarchief)
  • Tim Booth
  • Andreas Tille

Externe bronnen:

Vergelijkbare pakketten:

pipeline for building loci from short-read DNA sequences

Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.

Note that this package installs Stacks such that all commands must be run as: $ stacks <cmdname> <args>

Andere aan stacks gerelateerde pakketten

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    Ook een virtueel pakket geboden door: libc6-udeb
  • dep: libdbi-perl
    Perl Database Interface (DBI)
  • dep: libgcc-s1 (>= 3.3.1)
    GCC support library
  • dep: libgomp1 (>= 6)
    GCC OpenMP (GOMP) support library
  • dep: libhts3 (>= 1.10)
    C library for high-throughput sequencing data formats
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3
  • dep: samtools
    processing sequence alignments in SAM, BAM and CRAM formats
  • dep: zlib1g (>= 1:1.2.6)
    compression library - runtime
  • rec: libspreadsheet-writeexcel-perl
    module to create Excel spreadsheets
  • rec: littler
    GNU R scripting and command-line front-end -- transition package
    Ook een virtueel pakket geboden door: r-cran-littler
  • rec: python3
    interactive high-level object-oriented language (default python3 version)

stacks downloaden

Pakket downloaden voor alle beschikbare platforms
Platform Pakketgrootte Geïnstalleerde grootte Bestanden
ppc64el 1.095,0 kB4485 kB [overzicht]