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Пакет: r-bioc-rtracklayer (1.46.0-1)

GNU R interface to genome browsers and their annotation tracks

Extensible framework for interacting with multiple genome browsers (currently UCSC built-in) and manipulating annotation tracks in various formats (currently GFF, BED, bedGraph, BED15, WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the supported browsers, as well as query and modify the browser state, such as the current viewport.

Други пакети, свързани с r-bioc-rtracklayer

  • зависимости
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  • dep: libc6 (>= 2.28)
    GNU C Library: Shared libraries
    също и виртуален пакет, предлаган от libc6-udeb
  • dep: r-api-3.5
    виртуален пакет, предлаган от r-base-core
  • dep: r-api-bioc-3.10
    виртуален пакет, предлаган от r-bioc-biocgenerics
  • dep: r-base-core (>= 3.6.1-7)
    GNU R core of statistical computation and graphics system
  • dep: r-bioc-biocgenerics (>= 0.25.1)
    generic functions for Bioconductor
  • dep: r-bioc-biostrings (>= 2.47.6)
    GNU R string objects representing biological sequences
  • dep: r-bioc-genomeinfodb (>= 1.15.2)
    BioConductor utilities for manipulating chromosome identifiers
  • dep: r-bioc-genomicalignments (>= 1.15.6)
    BioConductor representation and manipulation of short genomic alignments
  • dep: r-bioc-genomicranges (>= 1.37.2)
    BioConductor representation and manipulation of genomic intervals
  • dep: r-bioc-iranges (>= 2.13.13)
    GNU R low-level containers for storing sets of integer ranges
  • dep: r-bioc-rsamtools (>= 1.31.2)
    GNU R binary alignment (BAM), variant call (BCF), or tabix file import
  • dep: r-bioc-s4vectors (>= 0.23.18)
    BioConductor S4 implementation of vectors and lists
  • dep: r-bioc-xvector (>= 0.19.7)
    BioConductor representation and manpulation of external sequences
  • dep: r-bioc-zlibbioc
    (Virtual) zlibbioc Bioconductor package
  • dep: r-cran-rcurl (>= 1.4-2)
    GNU R General network (HTTP/FTP/...) client interface
  • dep: r-cran-xml (>= 1.98-0)
    GNU R package for XML parsing and generation
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime
  • sug: r-bioc-bsgenome (>= 1.33.4)
    BioConductor infrastructure for Biostrings-based genome data packages
  • sug: r-bioc-genefilter
    methods for filtering genes from microarray experiments
  • sug: r-bioc-genomicfeatures
    GNU R tools for making and manipulating transcript centric annotations
  • sug: r-bioc-limma
    linear models for microarray data
  • sug: r-cran-runit
    GNU R package providing unit testing framework

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