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[ Източник: jellyfish  ]

Пакет: libjellyfish-perl (2.3.0-4build1)

Връзки за libjellyfish-perl

libjellyfish-perl

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Изтегляне на пакет-източник jellyfish.

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Подобни пакети:

count k-mers in DNA sequences (Perl bindings of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the Perl bindings of jellyfish.

Други пакети, свързани с libjellyfish-perl

  • зависимости
  • препоръчани
  • предложени
  • dep: libc6 (>= 2.14)
    GNU C Library: Shared libraries
    също и виртуален пакет, предлаган от libc6-udeb
  • dep: libgcc-s1 (>= 3.0)
    GCC support library
  • dep: perl (>= 5.30.0-9)
    Larry Wall's Practical Extraction and Report Language
  • dep: perlapi-5.30.0
    виртуален пакет, предлаган от perl-base

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