[ Източник: seqtools ]
Пакет: dotter (4.44.1+dfsg-2build1)
Връзки за dotter
Ресурси за Trisquel:
Изтегляне на пакет-източник seqtools.
- [seqtools_4.44.1+dfsg-2build1.dsc]
- [seqtools_4.44.1+dfsg.orig.tar.xz]
- [seqtools_4.44.1+dfsg-2build1.debian.tar.xz]
Отговорник:
Original Maintainers:
- Debian Med Packaging Team (Пощенски архив)
- Andreas Tille
Външни препратки:
- Начална страница [www.sanger.ac.uk]
Подобни пакети:
detailed comparison of two genomic sequences
Dotter is a graphical dot-matrix program for detailed comparison of two sequences.
* Every residue in one sequence is compared to every residue in the other, and a matrix of scores is calculated. * One sequence is plotted on the x-axis and the other on the y-axis. * Noise is filtered out so that alignments appear as diagonal lines. * Pairwise scores are averaged over a sliding window to make the score matrix more intelligible. * The averaged score matrix forms a three-dimensional landscape, with the two sequences in two dimensions and the height of the peaks in the third. This landscape is projected onto two dimensions using a grey-scale image - the darker grey of a peak, the higher the score is. * The contrast and threshold of the grey-scale image can be adjusted interactively, without having to recalculate the score matrix. * An Alignment Tool is provided to examine the sequence alignment that the grey-scale image represents. * Known high-scoring pairs can be loaded from a GFF file and overlaid onto the plot. * Gene models can be loaded from GFF and displayed alongside the relevant axis. * Compare a sequence against itself to find internal repeats. * Find overlaps between multiple sequences by making a dot-plot of all sequences versus themselves. * Run Dotter in batch mode to create large, time-consuming dot-plots as a background process.
Други пакети, свързани с dotter
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- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
също и виртуален пакет, предлаган от libc6-udeb
- dep: libc6 (>= 2.7) [i386]
-
- dep: libcairo2 (>= 1.2.4)
- Cairo 2D vector graphics library
-
- dep: libcurl4 (>= 7.16.2)
- easy-to-use client-side URL transfer library (OpenSSL flavour)
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- dep: libgbtools0
- library for visualising sequence alignments
-
- dep: libgcc1 (>= 1:3.0)
- GCC support library
-
- dep: libglib2.0-0 (>= 2.22.0)
- GLib library of C routines
-
- dep: libgtk2.0-0 (>= 2.12.0)
- GTK+ graphical user interface library
-
- dep: libpango-1.0-0 (>= 1.14.0)
- Layout and rendering of internationalized text
-
- dep: libpangocairo-1.0-0 (>= 1.14.0)
- Layout and rendering of internationalized text
-
- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
Изтегляне на dotter
Архитектура | Големина на пакета | Големина след инсталиране | Файлове |
---|---|---|---|
amd64 | 108,5 кБ | 308 кБ | [списък на файловете] |
i386 | 117,5 кБ | 334 кБ | [списък на файловете] |