[ aramo ]
[ Source: tiddit ]
Package: tiddit (2.12.2+dfsg-1build1)
Links for tiddit
Trisquel Resources:
Download Source Package tiddit:
- [tiddit_2.12.2+dfsg-1build1.dsc]
- [tiddit_2.12.2+dfsg.orig.tar.xz]
- [tiddit_2.12.2+dfsg-1build1.debian.tar.xz]
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Andreas Tille
External Resources:
- Homepage [github.com]
Similar packages:
structural variant calling
TIDDIT is a tool to used to identify chromosomal rearrangements using Mate Pair or Paired End sequencing data. TIDDIT identifies intra and inter- chromosomal translocations, deletions, tandem-duplications and inversions, using supplementary alignments as well as discordant pairs.
TIDDIT has two analysis modules. The sv mode, which is used to search for structural variants. And the cov mode that analyse the read depth of a bam file and generates a coverage report.
Other Packages Related to tiddit
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- dep: libbamtools2.5.1 (>= 2.5.1+dfsg)
- dynamic library for manipulating BAM (genome alignment) files
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libgcc-s1 (>= 3.3.1) [not armhf]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.11)
- dep: python3 (>= 3.10~)
Download tiddit
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 257.0 kB | 1015 kB | [list of files] |
| arm64 | 234.5 kB | 802 kB | [list of files] |
| armhf | 241.3 kB | 573 kB | [list of files] |
| ppc64el | 291.2 kB | 1359 kB | [list of files] |