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[ Source: debian-med  ]

Package: med-bio-dev (3.7.1)

Debian Med packages for development of bioinformatics applications

This metapackage will install Debian packages which might be helpful for development of applications for biological research.

Other Packages Related to med-bio-dev

  • depends
  • recommends
  • suggests
  • dep: med-config (= 3.7.1)
    Debian Med general config package
  • dep: med-tasks (= 3.7.1)
    Debian Med tasks for tasksel
  • sug: bioclipse
    Package not available
  • sug: conda-package-handling
    create and extract conda packages of various formats
  • sug: ctdconverter
    Convert CTD files into Galaxy tool and CWL CommandLineTool files
  • sug: cthreadpool-dev
    minimal ANSI C thread pool - development files
  • sug: cwlformat
    code formatter for Common Workflow Language
  • sug: libargs-dev
    simple header-only C++ argument parser library
  • sug: libatomicqueue-dev
    Package not available
  • sug: libbam-dev
    manipulates nucleotide sequence alignments in BAM or SAM format
  • sug: libbbhash-dev
    bloom-filter based minimal perfect hash function library
  • sug: libconcurrentqueue-dev
    industrial-strength lock-free queue for C++
  • sug: libdisorder-dev
    library for entropy measurement of byte streams (devel)
  • sug: libfast-perl
    Package not available
  • sug: libforester-java
    Package not available
  • sug: libfreecontact-dev
    fast protein contact predictor library - development files
    also a virtual package provided by libfreecontact-dev
  • sug: libfreecontact-doc
    documentation for libfreecontact
  • sug: libfreecontact-perl
    fast protein contact predictor - binding for Perl
  • sug: libmaus2-dev
    collection of data structures and algorithms for biobambam (devel)
  • sug: libmilib-java
    library for Next Generation Sequencing (NGS) data processing
  • sug: libminimap-dev
    development headers for libminimap
  • sug: libmodhmm-dev
    library for constructing, training and scoring hidden Markov models (dev)
  • sug: libnexml-java
    Package not available
  • sug: libpbcopper-dev
    data structures, algorithms, and utilities for C++ applications -- header files
  • sug: libqcpp-dev
    Package not available
  • sug: librelion-dev
    Package not available
  • sug: libroadrunner-dev
    Package not available
  • sug: librostlab-blast-doc
    very fast C++ library for parsing the output of NCBI BLAST programs (doc)
  • sug: librostlab-doc
    C++ library for computational biology (documentation)
  • sug: libssu-dev
    high-performance phylogenetic diversity calculations (dev)
  • sug: libsuma-dev
    headers and static library for sumatra and sumaclust
  • sug: libsvmloc-dev
    PSORTb adapted library for svm machine-learning library (dev)
  • sug: libswarm2-dev
    Package not available
  • sug: libtfbs-perl
    scanning DNA sequence with a position weight matrix
  • sug: libxxsds-dynamic-dev
    succinct and compressed fully-dynamic data structures library
  • sug: octace-bioinfo
    Package not available
  • sug: python-biopython-doc
    Documentation for the Biopython library
  • sug: python3-alignlib
    edit and Hamming distances for biological sequences
  • sug: python3-bcbio
    Package not available
  • sug: python3-bel-resources
    Python3 utilities for BEL resource files
  • sug: python3-biopython-sql
    Biopython support for the BioSQL database schema (Python 3)
  • sug: python3-cogent3
    framework for genomic biology
  • sug: python3-compclust
    Package not available
  • sug: python3-consensuscore2
    Package not available
  • sug: python3-cooler
    library for a sparse, compressed, binary persistent storage
  • sug: python3-ctdopts
    Gives your Python tools a CTD-compatible interface
  • sug: python3-ete3
    Python Environment for (phylogenetic) Tree Exploration - Python 3.X
  • sug: python3-galaxy-lib
    Package not available
  • sug: python3-intake
    lightweight package for finding and investigating data
  • sug: python3-joypy
    ridgeline-/joyplots plotting routine
  • sug: python3-mcaller
    Package not available
  • sug: python3-misopy
    Package not available
  • sug: python3-ncls
    datastructure for interval overlap queries
  • sug: python3-networkx
    tool to create, manipulate and study complex networks (Python3)
  • sug: python3-pangolearn
    Package not available
  • sug: python3-pycosat
    Python bindings to picosat
  • sug: python3-pyflow
    lightweight parallel task engine for Python
  • sug: python3-roadrunner
    Package not available
  • sug: python3-scanpy
    Package not available
  • sug: python3-seqcluster
    Package not available
  • sug: python3-skbio
    Python3 data structures, algorithms, educational resources for bioinformatic
  • sug: python3-torch
    Tensors and Dynamic neural networks in Python (Python Interface)
  • sug: python3-unifrac
    high-performance phylogenetic diversity calculations
  • sug: q2-alignment
    QIIME 2 plugin for generating and manipulating alignments
  • sug: q2-composition
    Package not available
  • sug: q2-cutadapt
    QIIME 2 plugin to work with adapters in sequence data
  • sug: q2-dada2
    QIIME 2 plugin to work with adapters in sequence data
  • sug: q2-deblur
    Package not available
  • sug: q2-demux
    QIIME 2 plugin for demultiplexing of sequence reads
  • sug: q2-diversity
    Package not available
  • sug: q2-emperor
    Package not available
  • sug: q2-feature-classifier
    QIIME 2 plugin supporting taxonomic classification
  • sug: q2-feature-table
    QIIME 2 plugin supporting operations on feature tables
  • sug: q2-fragment-insertion
    QIIME 2 plugin for fragment insertion
  • sug: q2-gneiss
    Package not available
  • sug: q2-longitudinal
    Package not available
  • sug: q2-metadata
    QIIME 2 plugin for working with and visualizing Metadata
  • sug: q2-phylogeny
    QIIME 2 plugin for phylogeny
  • sug: q2-quality-control
    QIIME 2 plugin for quality assurance of feature and sequence data
  • sug: q2-quality-filter
    QIIME2 plugin for PHRED-based filtering and trimming
  • sug: q2-sample-classifier
    QIIME 2 plugin for machine learning prediction of sample data
  • sug: q2-shogun
    Package not available
  • sug: q2-taxa
    QIIME 2 plugin for working with feature taxonomy annotations
  • sug: q2-types
    QIIME 2 plugin defining types for microbiome analysis
  • sug: q2-vsearch
    Package not available
  • sug: q2cli
    Package not available
  • sug: q2cwl
    Package not available
  • sug: q2lint
    Package not available
  • sug: q2templates
    Design template package for QIIME 2 Plugins
  • sug: qiime
    Quantitative Insights Into Microbial Ecology
  • sug: r-bioc-affxparser
    Affymetrix File Parsing SDK
  • sug: r-bioc-affy
    BioConductor methods for Affymetrix Oligonucleotide Arrays
  • sug: r-bioc-affyio
    BioConductor tools for parsing Affymetrix data files
  • sug: r-bioc-altcdfenvs
    BioConductor alternative CDF environments
  • sug: r-bioc-annotate
    BioConductor annotation for microarrays
  • sug: r-bioc-annotationdbi
    GNU R Annotation Database Interface for BioConductor
  • sug: r-bioc-annotationhub
    GNU R client to access AnnotationHub resources
  • sug: r-bioc-aroma.light
    BioConductor methods normalization and visualization of microarray data
  • sug: r-bioc-arrayexpress
    access to the ArrayExpress Microarray Database at EBI
  • sug: r-bioc-biocgenerics
    generic functions for Bioconductor
  • sug: r-bioc-biocneighbors
    Nearest Neighbor Detection for Bioconductor Packages
  • sug: r-bioc-biomart
    GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
  • sug: r-bioc-biomformat
    GNU R interface package for the BIOM file format
  • sug: r-bioc-biostrings
    GNU R string objects representing biological sequences
  • sug: r-bioc-biovizbase
    GNU R basic graphic utilities for visualization of genomic data
  • sug: r-bioc-bitseq
    transcript expression inference and analysis for RNA-seq data
  • sug: r-bioc-bridgedbr
    Package not available
  • sug: r-bioc-bsgenome
    BioConductor infrastructure for Biostrings-based genome data packages
  • sug: r-bioc-cager
    Package not available
  • sug: r-bioc-cner
    CNE Detection and Visualization
  • sug: r-bioc-complexheatmap
    make complex heatmaps using GNU R
  • sug: r-bioc-ctc
    Cluster and Tree Conversion
  • sug: r-bioc-cummerbund
    tool for analysis of Cufflinks RNA-Seq output
  • sug: r-bioc-dada2
    sample inference from amplicon sequencing data
  • sug: r-bioc-deseq
    GNU R differential gene expression analysis
  • sug: r-bioc-deseq2
    R package for RNA-Seq Differential Expression Analysis
  • sug: r-bioc-dnacopy
    R package: DNA copy number data analysis
  • sug: r-bioc-ebseq
    R package for RNA-Seq Differential Expression Analysis
  • sug: r-bioc-enrichedheatmap
    Package not available
  • sug: r-bioc-ensembldb
    GNU R utilities to create and use an Ensembl based annotation database
  • sug: r-bioc-genefilter
    methods for filtering genes from microarray experiments
  • sug: r-bioc-geneplotter
    R package of functions for plotting genomic data
  • sug: r-bioc-genomeinfodb
    BioConductor utilities for manipulating chromosome identifiers
  • sug: r-bioc-genomicalignments
    BioConductor representation and manipulation of short genomic alignments
  • sug: r-bioc-genomicfeatures
    GNU R tools for making and manipulating transcript centric annotations
  • sug: r-bioc-genomicranges
    BioConductor representation and manipulation of genomic intervals
  • sug: r-bioc-geoquery
    Get data from NCBI Gene Expression Omnibus (GEO)
  • sug: r-bioc-go.db
    annotation maps describing the entire Gene Ontology
  • sug: r-bioc-graph
    handle graph data structures for BioConductor
  • sug: r-bioc-gseabase
    Gene set enrichment data structures and methods
  • sug: r-bioc-gsva
    Gene Set Variation Analysis for microarray and RNA-seq data
  • sug: r-bioc-gviz
    Plotting data and annotation information along genomic coordinates
  • sug: r-bioc-hypergraph
    BioConductor hypergraph data structures
  • sug: r-bioc-impute
    Imputation for microarray data
  • sug: r-bioc-iranges
    GNU R low-level containers for storing sets of integer ranges
  • sug: r-bioc-limma
    linear models for microarray data
  • sug: r-bioc-makecdfenv
    BioConductor CDF Environment Maker
  • sug: r-bioc-mergeomics
    Integrative network analysis of omics data
  • sug: r-bioc-metagenomeseq
    GNU R statistical analysis for sparse high-throughput sequencing
  • sug: r-bioc-mofa
    Multi-Omics Factor Analysis (MOFA)
  • sug: r-bioc-multiassayexperiment
    Software for integrating multi-omics experiments in BioConductor
  • sug: r-bioc-nanostringqcpro
    processing and QA for NanoString mRNA expression data
  • sug: r-bioc-oligo
    Preprocessing tools for oligonucleotide arrays
  • sug: r-bioc-oligoclasses
    Classes for high-throughput arrays supported by oligo and crlmm
  • sug: r-bioc-org.hs.eg.db
    genome-wide annotation for Human
  • sug: r-bioc-pcamethods
    BioConductor collection of PCA methods
  • sug: r-bioc-phyloseq
    GNU R handling and analysis of high-throughput microbiome census data
  • sug: r-bioc-preprocesscore
    BioConductor collection of pre-processing functions
  • sug: r-bioc-purecn
    copy number calling and SNV classification using targeted short read sequencing
  • sug: r-bioc-qusage
    qusage: Quantitative Set Analysis for Gene Expression
  • sug: r-bioc-rbgl
    R interface to the graph algorithms contained in the BOOST library
  • sug: r-bioc-rentrez
    Package not available
  • sug: r-bioc-rsamtools
    GNU R binary alignment (BAM), variant call (BCF), or tabix file import
  • sug: r-bioc-rtracklayer
    GNU R interface to genome browsers and their annotation tracks
  • sug: r-bioc-s4vectors
    BioConductor S4 implementation of vectors and lists
  • sug: r-bioc-savr
    GNU R parse and analyze Illumina SAV files
  • sug: r-bioc-shortread
    GNU R classes and methods for high-throughput short-read sequencing data
  • sug: r-bioc-snpstats
    BioConductor SnpMatrix and XSnpMatrix classes and methods
  • sug: r-bioc-structuralvariantannotation
    Variant annotations for structural variants
  • sug: r-bioc-tfbstools
    GNU R Transcription Factor Binding Site (TFBS) Analysis
  • sug: r-bioc-titancna
    Subclonal copy number and LOH prediction from whole genome sequencing
  • sug: r-bioc-tximport
    transcript-level estimates for biological sequencing
  • sug: r-bioc-variantannotation
    BioConductor annotation of genetic variants
  • sug: r-bioc-xvector
    BioConductor representation and manpulation of external sequences
  • sug: r-cran-adegenet
    GNU R exploratory analysis of genetic and genomic data
  • sug: r-cran-adephylo
    GNU R exploratory analyses for the phylogenetic comparative method
  • sug: r-cran-amap
    Another Multidimensional Analysis Package
  • sug: r-cran-biwt
    biweight mean vector and covariance and correlation
  • sug: r-cran-drinsight
    Package not available
  • sug: r-cran-dt
    GNU R wrapper of the JavaScript library 'DataTables'
  • sug: r-cran-dynamictreecut
    Methods for Detection of Clusters in Hierarchical Clustering
  • sug: r-cran-fastcluster
    Fast hierarchical clustering routines for GNU R
  • sug: r-cran-future.apply
    apply function to elements in parallel using futures
  • sug: r-cran-future.batchtools
    Future API for Parallel and Distributed Processing
  • sug: r-cran-gprofiler
    Interface to the 'g:Profiler' Toolkit
  • sug: r-cran-ica
    Independent Component Analysis
  • sug: r-cran-itertools
    Iterator Tools
  • sug: r-cran-kaos
    Encoding of Sequences Based on Frequency Matrix Chaos
  • sug: r-cran-metap
    Meta-Analysis of Significance Values
  • sug: r-cran-minerva
    Maximal Information-Based Nonparametric Exploration
  • sug: r-cran-natserv
    GNU R 'NatureServe' Interface
  • sug: r-cran-nmf
    GNU R framework to perform non-negative matrix factorization
  • sug: r-cran-optimalcutpoints
    Computing Optimal Cutpoints in Diagnostic Tests
  • sug: r-cran-parmigene
    Parallel Mutual Information to establish Gene Networks
  • sug: r-cran-pcapp
    Robust PCA by Projection Pursuit
  • sug: r-cran-proc
    Display and Analyze ROC Curves
  • sug: r-cran-rann
    Fast Nearest Neighbour Search Using L2 Metric
  • sug: r-cran-rcpphnsw
    R bindings for a Library for Approximate Nearest Neighbors
  • sug: r-cran-robustrankaggreg
    Methods for robust rank aggregation
  • sug: r-cran-rocr
    GNU R package to prepare and display ROC curves
  • sug: r-cran-rook
    web server interface for R
  • sug: r-cran-rsvd
    Randomized Singular Value Decomposition
  • sug: r-cran-shazam
    Immunoglobulin Somatic Hypermutation Analysis
  • sug: r-cran-sitmo
    GNU R parallel pseudo random number generator 'sitmo' header files
  • sug: r-cran-venndiagram
    Generate High-Resolution Venn and Euler Plots
  • sug: r-other-apmswapp
    Package not available
  • sug: ruby-rgfa
    parse, edit and write GFA format graphs in Ruby
  • sug: vdjtools
    Package not available

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