原始碼套件： bioperl-run (1.7.1-3)
bioperl-run 的相關超連結
Trisquel 的資源：
維護者：
Original Maintainers:
- Debian Med Packaging Team (郵件存檔)
- Charles Plessy
- Andreas Tille
外部的資源：
- 主頁 [search.cpan.org]
本原始碼套件構建了以下這些二進制套件：
- bioperl-run
- BioPerl wrappers: scripts
- libbio-perl-run-perl
- BioPerl wrappers: modules
其他與 bioperl-run 有關的套件
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- adep: debhelper (>= 10)
- helper programs for debian/rules
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- idep: perl
- Larry Wall's Practical Extraction and Report Language
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- idep: libmodule-build-perl
- framework for building and installing Perl modules
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- idep: bioperl
- Perl tools for computational molecular biology
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- idep: libalgorithm-diff-perl
- module to find differences between files
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- idep: libipc-run-perl
- Perl module for running processes
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- idep: libio-string-perl
- Emulate IO::File interface for in-core strings
-
- idep: libxml-twig-perl
- Perl module for processing huge XML documents in tree mode
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- idep: libtest-most-perl
- Perl module with the most commonly needed test functions and features
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- idep: libarray-compare-perl
- Perl module to easily compare arrays
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- idep: libtree-dagnode-perl
- Perl (super)class for representing nodes in a tree
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- idep: amap-align
- Protein multiple alignment by sequence annealing
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- idep: bedtools
- suite of utilities for comparing genomic features
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- idep: blast2
- transitional dummy package to ncbi-blast+-legacy
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- idep: bowtie
- Ultrafast memory-efficient short read aligner
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- idep: bwa
- Burrows-Wheeler Aligner
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- idep: clustalw
- global multiple nucleotide or peptide sequence alignment
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- idep: emboss
- European molecular biology open software suite
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- idep: exonerate
- generic tool for pairwise sequence comparison
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- idep: hmmer
- profile hidden Markov models for protein sequence analysis
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- idep: hyphy-mpi
- Hypothesis testing using Phylogenies (MPI version)
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- idep: infernal
- inference of RNA secondary structural alignments
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- idep: kalign
- Global and progressive multiple sequence alignment
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- idep: maq
- maps short fixed-length polymorphic DNA sequence reads to reference sequences
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- idep: mafft
- Multiple alignment program for amino acid or nucleotide sequences
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- idep: muscle
- Multiple alignment program of protein sequences
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- idep: phylip
- package of programs for inferring phylogenies
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- idep: phyml
- Phylogenetic estimation using Maximum Likelihood
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- idep: primer3
- tool to design flanking oligo nucleotides for DNA amplification
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- idep: probcons
- PROBabilistic CONSistency-based multiple sequence alignment
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- idep: raxml
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
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- idep: samtools
- processing sequence alignments in SAM and BAM formats
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- idep: sim4
- tool for aligning cDNA and genomic DNA
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- idep: t-coffee
- Multiple Sequence Alignment
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- idep: tigr-glimmer
- Gene detection in archea and bacteria
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- idep: wise
- comparison of biopolymers, like DNA and protein sequences
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- idep: libwww-perl
- simple and consistent interface to the world-wide web
Download bioperl-run
| 文件 | 大小(單位: kB) | MD5 檢查碼 |
|---|---|---|
| bioperl-run_1.7.1-3.dsc | 2.5 kB | 7c4a23d4786b7e16e7309277792a77b5 |
| bioperl-run_1.7.1.orig.tar.gz | 13,572.0 kB | 3839c9b2cb42eea1895acb574e66e44b |
| bioperl-run_1.7.1-3.debian.tar.xz | 12.2 kB | d22a94a04454e7900aa1f550c1c3ca53 |
- Debian 套件原始碼倉庫(VCS: Subversion)
- svn://anonscm.debian.org/debian-med/trunk/packages/bioperl-run/trunk/
- Debian 套件原始碼倉庫(可在線瀏覽)
- https://anonscm.debian.org/viewvc/debian-med/trunk/packages/bioperl-run/trunk/