套件: vg (1.22.0+ds-1)
vg 的相關超連結
Trisquel 的資源:
下載原始碼套件 vg:
維護者:
Original Maintainers:
- Debian Med Packaging Team (郵件存檔)
- Michael R. Crusoe
外部的資源:
- 主頁 [github.com]
相似套件:
tools for working with genome variation graphs
variation graph data structures, interchange formats, alignment, genotyping, and variant calling methods
Variation graphs provide a succinct encoding of the sequences of many genomes. A variation graph (in particular as implemented in vg) is composed of:
- nodes, which are labeled by sequences and ids - edges, which connect two nodes via either of their respective ends - paths, describe genomes, sequence alignments, and annotations (such as gene models and transcripts) as walks through nodes connected by edges
This model is similar to a number of sequence graphs that have been used in assembly and multiple sequence alignment. Paths provide coordinate systems relative to genomes encoded in the graph, allowing stable mappings to be produced even if the structure of the graph is changed.
其他與 vg 有關的套件
|
|
|
-
- dep: libatomic1 (>= 4.8)
- support library providing __atomic built-in functions
-
- dep: libboost-program-options1.71.0
- program options library for C++
-
- dep: libc6 (>= 2.29)
- GNU C Library: Shared libraries
同時作為一個虛擬套件由這些套件提供: libc6-udeb
-
- dep: libcairo2 (>= 1.2.4)
- Cairo 2D vector graphics library
-
- dep: libdivsufsort3 (>= 2.0.1)
- fast suffix array construction
-
- dep: libdw1 (>= 0.126)
- library that provides access to the DWARF debug information
-
- dep: libfastahack0 (>= 0.0+git20160702.bbc645f)
- library for indexing and sequence extraction from FASTA files (lib)
-
- dep: libgcc-s1 (>= 4.2)
- GCC support library
-
- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
-
- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
-
- dep: libjansson4 (>= 2.2)
- C library for encoding, decoding and manipulating JSON data
-
- dep: libjemalloc2 (>= 5.0.0)
- general-purpose scalable concurrent malloc(3) implementation
-
- dep: libprotobuf17
- protocol buffers C++ library
-
- dep: libraptor2-0 (>= 2.0.14)
- Raptor 2 RDF syntax library
-
- dep: librocksdb5.17
- persistent Key-Value Store for Flash and RAM Storage
-
- dep: libssw0 (>= 1.1)
- fast SIMD parallelized implementation of the Smith-Waterman algorithm
-
- dep: libstdc++6 (>= 9)
- GNU Standard C++ Library v3
-
- dep: libtabixpp0 (>= 1.0.0)
- C++ wrapper to tabix indexer
-
- dep: libvcflib1 (>= 1.0.1+dfsg)
- C++ library for parsing and manipulating VCF files
-
- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime