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[ 原始碼: libfastahack  ]

套件: libfastahack0 (1.0.0+dfsg-5build1)

library for indexing and sequence extraction from FASTA files (lib)

fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.

Features:

 * FASTA index (.fai) generation for FASTA files
 * Sequence extraction
 * Subsequence extraction
 * Sequence statistics (currently only entropy is provided)

Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.

This package contains the dynamic library.

其他與 libfastahack0 有關的套件

  • 依賴
  • 推薦
  • 建議
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    同時作為一個虛擬套件由這些套件提供: libc6-udeb
    dep: libc6 (>= 2.4) [armhf]
  • dep: libgcc-s1 (>= 3.0) [amd64]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3

下載 libfastahack0

下載可用於所有硬體架構的
硬體架構 套件大小 安裝後大小 檔案
amd64 23.2 kB81 kB [文件列表]
armhf 19.6 kB49 kB [文件列表]