套件： kmc (2.3+dfsg-7build1)
kmc 的相關超連結
Trisquel 的資源：
下載原始碼套件 kmc：
維護者：
Original Maintainers:
- Debian Med Packaging Team (郵件存檔)
- Andreas Tille
- Jorge Soares
- Sascha Steinbiss
- Kevin Murray
外部的資源：
- 主頁 [sun.aei.polsl.pl]
相似套件：
count kmers in genomic sequences
The kmc software is designed for counting k-mers (sequences of consecutive k symbols) in a set of reads. K-mer counting is important for many bioinformatics applications, e.g. developing de Bruijn graph assemblers.
Building de Bruijn graphs is a commonly used approach for genome assembly with data from second-generation sequencing. Unfortunately, sequencing errors (frequent in practice) result in huge memory requirements for de Bruijn graphs, as well as long build time. One of the popular approaches to handle this problem is filtering the input reads in such a way that unique k-mers (very likely obtained as a result of an error) are discarded.
Thus, KMC scans the raw reads and produces a compact representation of all non-unique reads accompanied with number of their occurrences. The algorithm implemented in KMC makes use mostly of disk space rather than RAM, which allows one to use KMC even on rather typical personal computers. When run on high-end servers (what is necessary for KMC competitors) it outperforms them in both memory requirements and speed of computation. The disk space necessary for computation is in order of the size of input data (usually it is smaller).
其他與 kmc 有關的套件
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- dep: libbz2-1.0
- high-quality block-sorting file compressor library - runtime
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- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
同時作為一個虛擬套件由這些套件提供： libc6-udeb
- dep: libc6 (>= 2.4) [armhf]
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- dep: libgcc-s1 (>= 3.0) [amd64]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
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- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) support library
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- dep: libstdc++6 (>= 6)
- GNU Standard C++ Library v3
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- dep: zlib1g (>= 1:1.2.6)
- compression library - runtime