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[ 原始碼: indelible  ]

套件: indelible (1.03-5)

indelible 的相關超連結

indelible

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下載原始碼套件 indelible

維護者:

Original Maintainers:

外部的資源:

  • 主頁 [abacus.gene.ucl.ac.uk]

相似套件:

powerful and flexible simulator of biological evolution

INDELible is a new, portable, and flexible application for biological sequence simulation that combines many features in the same place for the first time. Using a length-dependent model of indel formation it can simulate evolution of multi-partitioned nucleotide, amino-acid, or codon data sets through the processes of insertion, deletion, and substitution in continuous time.

Nucleotide simulations may use the general unrestricted model or the general time reversible model and its derivatives, and amino-acid simulations can be conducted using fifteen different empirical rate matrices. Substitution rate heterogeneity can be modeled via the continuous and discrete gamma distributions, with or without a proportion of invariant sites. INDELible can also simulate under non-homogeneous and non-stationary conditions where evolutionary models are permitted to change across a phylogeny.

Unique among indel simulation programs, INDELible offers the ability to simulate using codon models that exhibit nonsynonymous/synonymous rate ratio heterogeneity among sites and/or lineages.

其他與 indelible 有關的套件

  • 依賴
  • 推薦
  • 建議
  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    同時作為一個虛擬套件由這些套件提供: libc6-udeb
  • dep: libgcc-s1 (>= 3.0) [除 armhf]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libstdc++6 (>= 9)
    GNU Standard C++ Library v3

下載 indelible

下載可用於所有硬體架構的
硬體架構 套件大小 安裝後大小 檔案
amd64 410.2 kB1475 kB [文件列表]
arm64 371.2 kB1295 kB [文件列表]
armhf 402.2 kB1194 kB [文件列表]
ppc64el 420.1 kB1503 kB [文件列表]