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[ 原始碼: python-nanomath  ]

套件: python3-nanomath (1.2.1+ds-1)

simple math function for other Oxford Nanopore processing scripts

This Python3 module provides a few simple math and statistics functions for other scripts processing Oxford Nanopore sequencing data.

 * Calculate read N50 from a set of lengths get_N50(readlenghts)
 * Remove extreme length outliers from a dataset
   remove_length_outliers(dataframe, columname)
 * Calculate the average Phred quality of a read ave_qual(qualscores)
 * Write out the statistics report after calling readstats function
   write_stats(dataframe, outputname)
 * Compute a number of statistics, return a dictionary
   calc_read_stats(dataframe)

其他與 python3-nanomath 有關的套件

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  • 建議
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: python3-deprecated
    Python decorator for old classes, functions or methods
  • dep: python3-numpy
    Fast array facility to the Python 3 language
  • dep: python3-pandas
    data structures for "relational" or "labeled" data

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