源码包: bioperl-run (1.7.3-8)
bioperl-run 的相关链接
Trisquel 的资源:
维护者:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Charles Plessy
- Andreas Tille
- Étienne Mollier
外部的资源:
- 主页 [metacpan.org]
本源码包构建了以下这些二进制包:
- bioperl-run
- BioPerl wrappers: scripts
- libbio-perl-run-perl
- BioPerl wrappers: modules
其他与 bioperl-run 有关的软件包
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- adep: debhelper-compat (= 13)
- 软件包暂时不可用
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- adep: libmodule-build-perl
- framework for building and installing Perl modules
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- idep: perl
- Larry Wall's Practical Extraction and Report Language
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- idep: bioperl (>= 1.7.4)
- Perl tools for computational molecular biology
-
- idep: libalgorithm-diff-perl
- module to find differences between files
-
- idep: libipc-run-perl
- Perl module for running processes
-
- idep: libio-string-perl
- Emulate IO::File interface for in-core strings
-
- idep: libxml-twig-perl
- Perl module for processing huge XML documents in tree mode
-
- idep: libfile-sort-perl
- module to sort a file or merge sort multiple files
-
- idep: libtest-most-perl
- Perl module with the most commonly needed test functions and features
-
- idep: libarray-compare-perl
- Perl module to easily compare arrays
-
- idep: libtree-dagnode-perl
- Perl (super)class for representing nodes in a tree
-
- idep: libbio-cluster-perl
- BioPerl cluster modules
-
- idep: libbio-featureio-perl
- Modules for reading, writing, and manipulating sequence features
-
- idep: libconfig-any-perl
- module to load configuration from different file formats
-
- idep: libbio-tools-run-alignment-clustalw-perl
- Bioperl interface to Clustal W
-
- idep: libbio-eutilities-perl
- BioPerl interface to the Entrez Programming Utilities (E-utilities)
-
- idep: libbio-tools-run-remoteblast-perl
- Object for remote execution of the NCBI Blast via HTTP
-
- idep: amap-align
- Protein multiple alignment by sequence annealing
-
- idep: bedtools
- suite of utilities for comparing genomic features
-
- idep: bedtools-test
- test data for the bedtools package
-
- idep: ncbi-blast+-legacy
- NCBI Blast legacy call script
-
- idep: clustalw
- global multiple nucleotide or peptide sequence alignment
-
- idep: emboss
- European molecular biology open software suite
-
- idep: exonerate
- generic tool for pairwise sequence comparison
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- idep: hmmer [any-amd64 any-i386 powerpc ppc64]
- profile hidden Markov models for protein sequence analysis
-
- idep: infernal [any-amd64 any-i386]
- inference of RNA secondary structural alignments
-
- idep: kalign
- Global and progressive multiple sequence alignment
-
- idep: mafft
- Multiple alignment program for amino acid or nucleotide sequences
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- idep: muscle
- Multiple alignment program of protein sequences
-
- idep: ncoils
- coiled coil secondary structure prediction
-
- idep: phyml
- Phylogenetic estimation using Maximum Likelihood
-
- idep: primer3
- tool to design flanking oligo nucleotides for DNA amplification
-
- idep: probcons
- PROBabilistic CONSistency-based multiple sequence alignment
-
- idep: python3-pybedtools
- Python 3 wrapper around BEDTools for bioinformatics work
-
- idep: raxml
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
-
- idep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- idep: sim4
- tool for aligning cDNA and genomic DNA
-
- idep: tigr-glimmer
- Gene detection in archea and bacteria
-
- idep: wise
- comparison of biopolymers, like DNA and protein sequences
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- idep: fasttree
- phylogenetic trees from alignments of nucleotide or protein sequences
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- idep: lagan
- highly parametrizable pairwise global genome sequence aligner
-
- idep: pal2nal
- converts proteins to genomic DNA alignment
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- idep: pftools [any-amd64]
- build and search protein and DNA generalized profiles
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- idep: libwww-perl
- simple and consistent interface to the world-wide web
Download bioperl-run
| 文件 | 大小(单位: kB) | MD5 校验码 |
|---|---|---|
| bioperl-run_1.7.3-8.dsc | 2.9 kB | cbe32e29ca7fe6809a91c0d66f69d3fe |
| bioperl-run_1.7.3.orig.tar.gz | 4,758.0 kB | e582f2dc591b947348670ce1479da109 |
| bioperl-run_1.7.3-8.debian.tar.xz | 18.4 kB | e180c86fb6a13d9918b99aee66e32901 |
- Debian 软件包源码仓库(VCS: Git)
- https://salsa.debian.org/med-team/bioperl-run.git
- Debian 软件包源码仓库(可在线浏览)
- https://salsa.debian.org/med-team/bioperl-run