[ nabia ]
[ aramo ]
[ 源代码: r-other-chbutils ]
软件包: r-other-chbutils (0.1+git20171026.a226cee-1)
r-other-chbutils 的相关链接
Trisquel 的资源:
下载源码包 r-other-chbutils:
- [r-other-chbutils_0.1+git20171026.a226cee-1.dsc]
- [r-other-chbutils_0.1+git20171026.a226cee.orig.tar.xz]
- [r-other-chbutils_0.1+git20171026.a226cee-1.debian.tar.xz]
维护者:
Original Maintainers:
- Debian R Packages Maintainers
- Andreas Tille
外部的资源:
- 主页 [github.com]
相似软件包:
GNU R utilities from Harvard School of Public Health Bioinformatics
This GNU R package contains the following functions:
chb_utils-package chb_utils annotate_df Annotate Dataframe containing Ensembl IDs with Gene Symbols and Descriptions boxplotoutliers Cel file IDs of intensity boxplot outlier arrays (in characters). chb_utils chb_utils col2rownames add a column to a dataframe consisting of the current rownames convertIDs Get other Ids for genes in the same order create_report Create report of QC getTFpairs Get mouse TF-target pairs from opossum database get_biomart Get biomart annotation from id ggheatmap generate a heatmap + dendrograms, ggplot2 style ggheatmap.show Display a ggheatmap ggplotDispEsts Plot Dispersion Estimates - nicer ggplot version of DESeq graph mds Plot MDS mdsplot.RGset MDS (MultiDimensional Scaling) Plots nuseoutliers Cel file IDs of intensity NUSE outlier arrays (in characters). PCAplot.cds Pairwise Principal Component Analysis Plots of CountDataSet objects PCAplot.eset Pairwise Principal Component Analysis Plots Plots the differntially expressed genes on an MA plotDE plot, ggplot style If adjusted pvalues are present, colors those that pass cutoff red plot_dendro ggplot based dendrogram plot print_enrichGO Clean and print results from enrichGO Plots the pvalue quantiles against the uniform qqplot_JH distribution. If adjusted pvalues are present, colors those that pass cutoff red rleoutliers Cel file IDs of intensity RLE outlier arrays (in characters). row2colnames add a column to a dataframe consisting of the current rownames runGO Run GO using clusterprofiler variance_by_component Plot PC importance volcano_density_plot Create volcano plot from log2FC and adjusted pvalues data frame write_report Write report of QC
其他与 r-other-chbutils 有关的软件包
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- dep: r-api-3.5
- 本虚包由这些包填实: r-base-core
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- dep: r-base-core (>= 3.6.1-2)
- GNU R core of statistical computation and graphics system