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[ 源代码: r-cran-adegenet  ]

软件包: r-cran-adegenet (2.1.2-1)

GNU R exploratory analysis of genetic and genomic data

Toolset for the exploration of genetic and genomic data. Adegenet provides formal (S4) classes for storing and handling various genetic data, including genetic markers with varying ploidy and hierarchical population structure ('genind' class), alleles counts by populations ('genpop'), and genome-wide SNP data ('genlight'). It also implements original multivariate methods (DAPC, sPCA), graphics, statistical tests, simulation tools, distance and similarity measures, and several spatial methods. A range of both empirical and simulated datasets is also provided to illustrate various methods.

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  • dep: libc6 (>= 2.4)
    GNU C Library: Shared libraries
    同时作为一个虚包由这些包填实: libc6-udeb
  • dep: r-api-3.5
    本虚包由这些包填实: r-base-core
  • dep: r-base-core (>= 3.6.2-2)
    GNU R core of statistical computation and graphics system
  • dep: r-cran-ade4
    GNU R analysis of ecological data
  • dep: r-cran-ape
    GNU R package for Analyses of Phylogenetics and Evolution
  • dep: r-cran-boot
    GNU R package for bootstrapping functions from Davison and Hinkley
  • dep: r-cran-dplyr (>= 0.4.1)
    GNU R grammar of data manipulation
  • dep: r-cran-ggplot2
    implementation of the Grammar of Graphics
  • dep: r-cran-igraph
    GNU R network analysis and visualization
  • dep: r-cran-mass
    GNU R package of Venables and Ripley's MASS
  • dep: r-cran-reshape2
    Flexibly reshape data: a reboot of the reshape package
  • dep: r-cran-seqinr
    GNU R biological sequences retrieval and analysis
  • dep: r-cran-shiny
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  • dep: r-cran-spdep
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  • dep: r-cran-vegan
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  • sug: r-cran-maps
    GNU R support for producing geographic maps

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