软件包: libtfbs-perl (0.7.1-3)
libtfbs-perl 的相关链接
Trisquel 的资源:
下载源码包 libtfbs-perl:
维护者:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Steffen Moeller
- Charles Plessy
- Andreas Tille
外部的资源:
- 主页 [tfbs.genereg.net]
相似软件包:
scanning DNA sequence with a position weight matrix
The TFBS perl modules comprise a set of routines to interact with the Transfac and Jaspar databases that describe a special family of proteins, the transcription factors. These bind to genomic DNA to initiate (or prevent) the readout of a gene. Once multiple binding sites are known for a transcription factor, these are gathered in a single file and are aligned in order to find position-specific characteristica that might be used to predict such binding events in novel DNA sequences.
If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002) TFBS: Computational framework for transcription factor binding site analysis. Bioinformatics 18:1135-1136".
Note: the TFBS perl module is no longer under active development. All the functionality can be found in the TFBSTools Bioconductor package; users are highly encouraged to switch. <http://bioconductor.org/packages/TFBSTools/>
其他与 libtfbs-perl 有关的软件包
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- dep: bioperl
- Perl tools for computational molecular biology
-
- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
同时作为一个虚包由这些包填实: libc6-udeb
- dep: libc6 (>= 2.7) [armhf]
-
- dep: libdbi-perl
- Perl Database Interface (DBI)
-
- dep: libwww-perl
- simple and consistent interface to the world-wide web
-
- dep: pdl (>= 1:2.019-5build2)
- perl data language: Perl extensions for numerics
-
- dep: perl (>= 5.30.0-8)
- Larry Wall's Practical Extraction and Report Language
-
- dep: perlapi-5.30.0
- 本虚包由这些包填实: perl-base
-
- rec: libgd-gd2-perl
- 本虚包由这些包填实: libgd-perl
- 或者 libgd-gd2-noxpm-perl
- 本虚包由这些包填实: libgd-perl