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软件包: python3-mdanalysis (2.0.0+dfsg1-4build1)

analyse molecular dynamics files and trajectories

MDAnalysis is a Python library for the analysis of computer simulations of many-body systems at the molecular scale, spanning use cases from interactions of drugs with proteins to novel materials. It is widely used in the scientific community and is written by scientists for scientists.

MDAnalysis allows one to read particle-based trajectories (including individual coordinate frames such as biomolecules in the PDB format) and access the atomic coordinates through NumPy arrays. This provides a flexible and relatively fast framework for complex analysis tasks. In addition, powerful atom selection commands are implemented. Trajectories can also be manipulated (for instance, fit to a reference structure) and written out.

It works with a wide range of popular simulation packages including Gromacs, Amber, NAMD, CHARMM, DL_Poly, HooMD, LAMMPS and many others — see the lists of supported trajectory formats and topology formats. MDAnalysis also includes widely used analysis algorithms in the MDAnalysis.analysis module.

The MDAnalysis project uses an open governance model and is fiscally sponsored by NumFOCUS.

This package installs the library for Python 3.

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  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    同时作为一个虚包由这些包填实: libc6-udeb
    dep: libc6 (>= 2.17) [arm64, ppc64el]
    dep: libc6 (>= 2.4) [armhf]
  • dep: libgcc-s1 (>= 3.3.1) [除 armhf]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libgomp1 (>= 4.9)
    GCC OpenMP (GOMP) support library
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
    dep: python3 (<< 3.11)
    dep: python3 (>= 3.10~)
  • dep: python3-biopython (>= 1.71)
    Python3 library for bioinformatics
  • dep: python3-duecredit
    Publications (and donations) tracer
  • dep: python3-griddataformats (>= 0.4.0)
    Handling volumetric data in Python
  • dep: python3-gsd (>= 1.4.0)
    native file format for HOOMD-blue (Python 3 module)
  • dep: python3-joblib (>= 0.12)
    tools to provide lightweight pipelining in Python
  • dep: python3-matplotlib (>= 1.5.1)
    Python based plotting system in a style similar to Matlab (Python 3)
  • dep: python3-mmtf (>= 1.0.0)
    binary encoding of biological structures (Python 3)
  • dep: python3-networkx (>= 1.0)
    tool to create, manipulate and study complex networks (Python3)
  • dep: python3-numpy (>= 1:1.20.0)
    Fast array facility to the Python 3 language
  • dep: python3-numpy-abi9
    本虚包由这些包填实: python3-numpy
  • dep: python3-scipy (>= 1.0.0)
    scientific tools for Python 3
  • dep: python3-threadpoolctl
    Python helpers for common threading libraries (BLAS, OpenMP)
  • dep: python3-tqdm (>= 4.43.0)
    fast, extensible progress bar for Python 3 and CLI tool
  • rec: python3-sklearn
    Python modules for machine learning and data mining - Python 3

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硬件架构 软件包大小 安装后大小 文件
amd64 1,194.0 kB5681 kB [文件列表]
arm64 1,230.7 kB5376 kB [文件列表]
armhf 1,133.5 kB4673 kB [文件列表]
ppc64el 1,283.0 kB6416 kB [文件列表]