[ 源代码: parsnp ]
软件包: parsnp (1.6.2+dfsg-1)
parsnp 的相关链接
Trisquel 的资源:
下载源码包 parsnp:
维护者:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Andreas Tille
外部的资源:
- 主页 [harvest.readthedocs.org]
相似软件包:
rapid core genome multi-alignment
Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.
其他与 parsnp 有关的软件包
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- dep: fasttree
- phylogenetic trees from alignments of nucleotide or protein sequences
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- dep: harvest-tools
- archiving and postprocessing for reference-compressed genomic multi-alignments
-
- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
同时作为一个虚包由这些包填实: libc6-udeb
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- dep: libgcc-s1 (>= 3.3.1) [除 armhf]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
-
- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
-
- dep: libmuscle1 (>= 3.7+4565)
- multiple alignment library for protein sequences
-
- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
-
- dep: mummer
- Efficient sequence alignment of full genomes
-
- dep: phipack
- PHI test and other tests of recombination
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: python3-numpy
- Fast array facility to the Python 3 language
-
- dep: raxml
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
-
- rec: python3-dendropy
- DendroPy Phylogenetic Computing Library (Python 3)