软件包: augustus (3.4.0+dfsg2-3build1)
augustus 的相关链接
Trisquel 的资源:
下载源码包 augustus:
- [augustus_3.4.0+dfsg2-3build1.dsc]
- [augustus_3.4.0+dfsg2.orig.tar.xz]
- [augustus_3.4.0+dfsg2-3build1.debian.tar.xz]
维护者:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Sascha Steinbiss
外部的资源:
- 主页 [bioinf.uni-greifswald.de]
相似软件包:
gene prediction in eukaryotic genomes
AUGUSTUS is a software for gene prediction in eukaryotic genomic sequences that is based on a generalized hidden Markov model (HMM), a probabilistic model of a sequence and its gene structure. After learning gene structures from a reference annotation, AUGUSTUS uses the HMM to recognize genes in a new sequence and annotates it with the regions of identified genes. External hints, e.g. from RNA sequencing, EST or protein alignments etc. can be used to guide and improve the gene finding process. The result is the set of most likely gene structures that comply with all given user constraints, if such gene structures exist. AUGUSTUS already includes prebuilt HMMs for many species, as well as scripts to train custom models using annotated genomes.
其他与 augustus 有关的软件包
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- dep: augustus-data
- data files for AUGUSTUS
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- dep: libbamtools2.5.1 (>= 2.5.1+dfsg)
- dynamic library for manipulating BAM (genome alignment) files
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- dep: libboost-iostreams1.74.0 (>= 1.74.0)
- Boost.Iostreams Library
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
同时作为一个虚包由这些包填实: libc6-udeb
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- dep: libcolamd2 (>= 1:4.5.2)
- column approximate minimum degree ordering library for sparse matrices
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- dep: libgcc-s1 (>= 3.3.1) [amd64]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
- dep: libgcc-s1 (>= 4.2) [ppc64el]
- dep: libgcc-s1 (>= 4.5) [arm64]
-
- dep: libgsl27 (>= 2.7.1)
- GNU Scientific Library (GSL) -- library package
-
- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
-
- dep: libmysql++3v5 (>= 3.2.5-1~)
- MySQL C++ library bindings (runtime)
-
- dep: libmysqlclient21 (>= 8.0.11)
- MySQL database client library
-
- dep: libsqlite3-0 (>= 3.5.9)
- SQLite 3 shared library
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
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- rec: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- sug: cdbfasta
- Constant DataBase indexing and retrieval tools for multi-FASTA files
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- sug: diamond-aligner
- accelerated BLAST compatible local sequence aligner
-
- sug: libdbd-mysql-perl
- Perl5 database interface to the MariaDB/MySQL database
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- sug: libfile-which-perl
- Perl module for searching paths for executable programs
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- sug: libparallel-forkmanager-perl
- simple parallel processing fork manager for Perl
-
- sug: libyaml-perl
- YAML Ain't Markup Language
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- sug: python3-biopython
- Python3 library for bioinformatics