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[ 源代码: hinge  ]

软件包: hinge (0.5.0-7)

hinge 的相关链接

hinge

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long read genome assembler based on hinging

HINGE is a genome assembler that seeks to achieve optimal repeat resolution by distinguishing repeats that can be resolved given the data from those that cannot. This is accomplished by adding “hinges” to reads for constructing an overlap graph where only unresolvable repeats are merged. As a result, HINGE combines the error resilience of overlap-based assemblers with repeat-resolution capabilities of de Bruijn graph assemblers.

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  • dep: daligner
    local alignment discovery between long nucleotide sequencing reads
  • dep: dascrubber
    alignment-based scrubbing pipeline for DNA sequencing reads
  • dep: dazzdb
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  • dep: libc6 (>= 2.34)
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    同时作为一个虚包由这些包填实: libc6-udeb
  • dep: libfmt8 (>= 8.0.1+ds1)
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  • dep: libgcc-s1 (>= 4.5)
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  • dep: libgomp1 (>= 4.2.1)
    GCC OpenMP (GOMP) support library
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: python3-colormap
    ease manipulation of matplotlib colormaps and color codecs (Python 3)
  • dep: python3-matplotlib
    Python based plotting system in a style similar to Matlab (Python 3)
  • dep: python3-networkx
    tool to create, manipulate and study complex networks (Python3)
  • dep: python3-numpy
    Fast array facility to the Python 3 language
  • dep: python3-pbcore
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  • dep: python3-ujson
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  • dep: zlib1g (>= 1:1.1.4)
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硬件架构 软件包大小 安装后大小 文件
arm64 459.8 kB2515 kB [文件列表]