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Пакунок: libfreecontact-perl (0.08-6)

fast protein contact predictor - binding for Perl

FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).

FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.

A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.

jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.

This package contains the Perl binding.

Інші пакунки пов'язані з libfreecontact-perl

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.4) [i386]
  • dep: libfreecontact0v5
    fast protein contact predictor library
  • dep: libgcc1 (>= 1:3.0)
    GCC support library
  • dep: perl (>= 5.26.1-2ubuntu1)
    Larry Wall's Practical Extraction and Report Language
  • dep: perlapi-5.26.1
    virtual package provided by perl-base

Завантажити libfreecontact-perl

Завантаження для всіх доступних архітектур
Архітектура Розмір пакунка Розмір після встановлення Файли
amd64 71.3 kB130 kB [список файлів]
i386 72.6 kB137 kB [список файлів]