[ Source: pairtools ]
Пакунок: python3-pairtools (1.0.3-1build1)
Links for python3-pairtools
Trisquel Resources:
Download Source Package pairtools:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Antoni Villalonga
External Resources:
- Homepage [github.com]
Similar packages:
Framework to process sequencing data from a Hi-C experiment
Simple and fast command-line framework to process sequencing data from a Hi-C experiment.
Process pair-end sequence alignments and perform the following operations:
- Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
sequences of Hi-C DNA molecules
- Sort .pairs files for downstream analyses
- Detect, tag and remove PCR/optical duplicates
- Generate extensive statistics of Hi-C datasets
- Select Hi-C pairs given flexibly defined criteria
- Restore .sam alignments from Hi-C pairs
Інші пакунки пов'язані з python3-pairtools
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- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.17) [arm64, ppc64el]
- dep: libc6 (>= 2.27) [riscv64]
- dep: libc6 (>= 2.4) [armhf]
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- dep: libgcc-s1 (>= 3.0) [riscv64]
- GCC support library
- dep: libgcc-s1 (>= 3.3.1) [not armhf, riscv64]
- dep: libgcc-s1 (>= 3.5) [armhf]
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.13)
- dep: python3 (>= 3.12~)
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- dep: python3-bioframe
- library to enable flexible, scalable operations on genomic interval dataframes
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- dep: python3-click
- Wrapper around optparse for command line utilities - Python 3.x
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- dep: python3-numpy (>= 1:1.25.0)
- Fast array facility to the Python language (Python 3)
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- dep: python3-numpy-abi9
- virtual package provided by python3-numpy
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- dep: python3-pandas
- data structures for "relational" or "labeled" data
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- dep: python3-pysam (>= 0.20.0+ds-3~)
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: python3-scipy
- scientific tools for Python 3
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- dep: python3-yaml
- YAML parser and emitter for Python3
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- sug: python3-pairtools-examples (>= 1.0.2)
- Process sequencing data from a Hi-C experiment (examples)
Завантажити python3-pairtools
| Архітектура | Розмір пакунка | Розмір після встановлення | Файли |
|---|---|---|---|
| amd64 | 196.0 kB | 775 kB | [список файлів] |
| arm64 | 188.0 kB | 889 kB | [список файлів] |
| armhf | 181.4 kB | 613 kB | [список файлів] |
| ppc64el | 220.8 kB | 953 kB | [список файлів] |
| riscv64 | 195.3 kB | 693 kB | [список файлів] |