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Пакунок: canu (2.0+dfsg-2)

single molecule sequence assembler for genomes

Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION).

Canu is a hierarchical assembly pipeline which runs in four steps: 

 * Detect overlaps in high-noise sequences using MHAP
 * Generate corrected sequence consensus
 * Trim corrected sequences
 * Assemble trimmed corrected sequences

Інші пакунки пов'язані з canu

  • depends
  • recommends
  • suggests
  • dep: gnuplot
    Command-line driven interactive plotting program.
    also a virtual package provided by gnuplot-nox, gnuplot-qt, gnuplot-x11
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libfilesys-df-perl
    Module to obtain filesystem disk space information
  • dep: libgcc-s1 (>= 3.5)
    GCC support library
  • dep: libgomp1 (>= 6)
    GCC OpenMP (GOMP) support library
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3
  • dep: mhap
    locality-sensitive hashing to detect long-read overlaps
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • sug: nanopolish
    consensus caller for nanopore sequencing data
  • sug: pbgenomicconsensus
    Пакунок недоступний

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