Paket: hisat2 (2.2.1-3)

hisat2 için bağlantılar

Trisquel Kaynakları:

hisat2 Kaynak Paketini İndir:

Geliştirici:

Debian Med Packaging Team (Posta Arşivi)

Original Maintainers:

Debian Med Packaging Team (Posta Arşivi)
Michael R. Crusoe

Dış Kaynaklar:

Ana Sayfa [daehwankimlab.github.io]

Benzer paketler:

graph-based alignment of short nucleotide reads to many genomes

HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes (as well as against a single reference genome). Based on an extension of BWT for graphs a graph FM index (GFM) was designed and implementd. In addition to using one global GFM index that represents a population of human genomes, HISAT2 uses a large set of small GFM indexes that collectively cover the whole genome (each index representing a genomic region of 56 Kbp, with 55,000 indexes needed to cover the human population). These small indexes (called local indexes), combined with several alignment strategies, enable rapid and accurate alignment of sequencing reads. This new indexing scheme is called a Hierarchical Graph FM index (HGFM).

hisat2 ile İlgili Diğer Paketler

bağımlılıklar

tavsiye edilen

önerilen

dep: libc6 (>= 2.34)

GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb
dep: libgcc-s1 (>= 3.3.1) [armhf değil]

GCC support library

dep: libgcc-s1 (>= 3.5) [armhf]
dep: libstdc++6 (>= 11)

GNU Standard C++ Library v3
dep: perl

Larry Wall's Practical Extraction and Report Language
dep: python3

interactive high-level object-oriented language (default python3 version)

rec: bcftools

genomic variant calling and manipulation of VCF/BCF files
rec: python3-hisat2

Python scripts accompanying hisat2
rec: samtools

processing sequence alignments in SAM, BAM and CRAM formats

hisat2 indir

Tüm mevcut mimariler için indir
Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	3.742,3 kB	12081 kB	[dosya listesi]
arm64	3.940,2 kB	11305 kB	[dosya listesi]
armhf	3.996,4 kB	11485 kB	[dosya listesi]
ppc64el	4.149,5 kB	12233 kB	[dosya listesi]

Sections