[ Källkod: mash ]
Paket: mash (2.2.2+dfsg-1build1)
Länkar för mash
Trisquelresurser:
Hämta källkodspaketet mash:
Ansvarig:
Original Maintainers:
- Debian Med Packaging Team (E-postarkiv)
- Sascha Steinbiss
Externa resurser:
- Hemsida [mash.readthedocs.io]
Liknande paket:
fast genome and metagenome distance estimation using MinHash
Mash uses MinHash locality-sensitive hashing to reduce large biosequences to a representative sketch and rapidly estimate pairwise distances between genomes or metagenomes. Mash sketch databases effectively delineate known species boundaries, allow construction of approximate phylogenies, and can be searched in seconds using assembled genomes or raw sequencing runs from Illumina, Pacific Biosciences, and Oxford Nanopore. For metagenomics, Mash scales to thousands of samples and can replicate Human Microbiome Project and Global Ocean Survey results in a fraction of the time.
Andra paket besläktade med mash
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- dep: libc6 (>= 2.29)
- GNU C Library: Shared libraries
också ett virtuellt paket som tillhandahålls av libc6-udeb
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- dep: libcapnp-0.7.0
- Cap'n Proto C++ library
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- dep: libgcc-s1 (>= 3.0) [amd64]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
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- dep: libgsl23 (>= 2.5)
- GNU Scientific Library (GSL) -- library package
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- dep: libmurmurhash2 (>= 0.2)
- Portable MurmurHash Implementation
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
Hämta mash
| Arkitektur | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|
| amd64 | 150,4 kbyte | 447 kbyte | [filförteckning] |
| armhf | 128,8 kbyte | 278 kbyte | [filförteckning] |