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[ Källkod: python-cogent  ]

Paket: python-cogent (1.9-11build1)

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python-cogent

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Original Maintainers:

  • Debian Med Packaging Team (E-postarkiv)
  • Steffen Moeller
  • Andreas Tille
  • Thorsten Alteholz

Externa resurser:

Liknande paket:

framework for genomic biology

PyCogent is a software library for genomic biology. It is a fully integrated and thoroughly tested framework for: 

 * controlling third-party applications,
 * devising workflows; querying databases,
 * conducting novel probabilistic analyses of biological sequence
   evolution, and
 * generating publication quality graphics.
It is distinguished by many unique built-in capabilities (such as true codon alignment) and the frequent addition of entirely new methods for the analysis of genomic data.

Andra paket besläktade med python-cogent

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  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    också ett virtuellt paket som tillhandahålls av libc6-udeb
    dep: libc6 (>= 2.4) [i386]
  • dep: python
    interactive high-level object-oriented language (default version)
    dep: python (<< 2.8)
    dep: python (>= 2.7~)
  • dep: python-matplotlib
    Python based plotting system in a style similar to Matlab
  • dep: python-numpy (>= 1:1.10.0~b1)
    Numerical Python adds a fast array facility to the Python language
  • dep: python-numpy-abi9
    virtuellt paket som tillhandahålls av python-numpy
  • rec: blast2
    transitional dummy package to ncbi-blast+-legacy
  • rec: bwa [amd64]
    Burrows-Wheeler Aligner
  • rec: cd-hit
    suite of programs designed to quickly group sequences
  • rec: clearcut
    extremely efficient phylogenetic tree reconstruction
  • rec: dialign
    Segment-based multiple sequence alignment
  • rec: muscle
    Multiple alignment program of protein sequences
  • sug: cdbfasta
    Constant DataBase indexing and retrieval tools for multi-FASTA files
  • sug: clustalw
    global multiple nucleotide or peptide sequence alignment
  • sug: fasttree
    phylogenetic trees from alignments of nucleotide or protein sequences
  • sug: infernal
    inference of RNA secondary structural alignments
  • sug: mafft
    Multiple alignment program for amino acid or nucleotide sequences
  • sug: mothur
    sequence analysis suite for research on microbiota
  • sug: parsinsert
    Parsimonious Insertion of unclassified sequences into phylogenetic trees
  • sug: python-cogent-doc
    docs for python-cogent
  • sug: raxml
    Randomized Axelerated Maximum Likelihood of phylogenetic trees
  • sug: rdp-classifier
    extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
  • sug: rtax
    Classification of sequence reads of 16S ribosomal RNA gene

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Hämtningar för alla tillgängliga arkitekturer
Arkitektur Paketstorlek Installerad storlek Filer
amd64 2.393,2 kbyte7656 kbyte [filförteckning]
i386 2.373,1 kbyte7615 kbyte [filförteckning]