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Paket: mmseqs2 (13-45111+ds-2)

ultra fast and sensitive protein search and clustering

MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge proteins/nucleotide sequence sets. MMseqs2 is open source GPL-licensed software implemented in C++ for Linux, MacOS, and (as beta version, via cygwin) Windows. The software is designed to run on multiple cores and servers and exhibits very good scalability. MMseqs2 can run 10000 times faster than BLAST. At 100 times its speed it achieves almost the same sensitivity. It can perform profile searches with the same sensitivity as PSI-BLAST at over 400 times its speed.

Andra paket besläktade med mmseqs2

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    support library providing __atomic built-in functions
  • dep: libbz2-1.0
    high-quality block-sorting file compressor library - runtime
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    också ett virtuellt paket som tillhandahålls av libc6-udeb
  • dep: libgcc-s1 (>= 3.0)
    GCC support library
  • dep: libgomp1 (>= 6)
    GCC OpenMP (GOMP) support library
  • dep: libgzstream0 (>= 1.5+dfsg)
    provide functionality of zlib C-library in a C++ iostream
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3
  • dep: zlib1g (>= 1:1.2.6)
    compression library - runtime

Hämta mmseqs2

Hämtningar för alla tillgängliga arkitekturer
Arkitektur Paketstorlek Installerad storlek Filer
amd64 7.222,3 kbyte32696 kbyte [filförteckning]
arm64 4.906,8 kbyte8384 kbyte [filförteckning]
ppc64el 5.153,6 kbyte9852 kbyte [filförteckning]