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Paket: r-cran-phytools (1.0-1-1)

GNU R phylogenetic tools for comparative biology

A wide range of functions for phylogenetic analysis. Functionality is concentrated in phylogenetic comparative biology, but also includes a diverse array of methods for visualizing, manipulating, reading or writing, and even inferring phylogenetic trees and data. Included among the functions in phylogenetic comparative biology are various for ancestral state reconstruction, model-fitting, simulation of phylogenies and data, and multivariate analysis. There are a broad range of plotting methods for phylogenies and comparative data which include, but are not restricted to, methods for mapping trait evolution on trees, for projecting trees into phenotypic space or a geographic map, and for visualizing correlated speciation between trees. Finally, there are a number of functions for reading, writing, analyzing, inferring, simulating, and manipulating phylogenetic trees and comparative data not covered by other packages. For instance, there are functions for randomly or non-randomly attaching species or clades to a phylogeny, for estimating supertrees or consensus phylogenies from a set, for simulating trees and phylogenetic data under a range of models, and for a wide variety of other manipulations and analyses that phylogenetic biologists might find useful in their research.

Andra paket besläktade med r-cran-phytools

  • beror
  • rekommenderar
  • föreslår
  • dep: r-api-4.0
    virtuellt paket som tillhandahålls av r-base-core
  • dep: r-base-core (>= 4.1.2-1ubuntu1)
    GNU R core of statistical computation and graphics system
  • dep: r-cran-ape (>= 4.0)
    GNU R package for Analyses of Phylogenetics and Evolution
  • dep: r-cran-clustergeneration
    GNU R random cluster generation (with specified degree of separation)
  • dep: r-cran-coda
    Output analysis and diagnostics for MCMC simulations in R
  • dep: r-cran-combinat
    GNU R package with utilities for combinatorics
  • dep: r-cran-expm
    GNU R Computation of the matrix exponential and related quantities
  • dep: r-cran-maps
    GNU R support for producing geographic maps
  • dep: r-cran-mass
    GNU R package of Venables and Ripley's MASS
  • dep: r-cran-mnormt
    GNU R package providing multivariate normal and t distribution
  • dep: r-cran-nlme
    GNU R package for (non-)linear mixed effects models
  • dep: r-cran-numderiv
    GNU R package for accurate numerical derivatives
  • dep: r-cran-phangorn (>= 2.3.1)
    GNU R package for phylogenetic analysis
  • dep: r-cran-plotrix
    GNU R package providing various plotting functions
  • dep: r-cran-scatterplot3d
    GNU R package for Visualizing Multivariate Data
  • sug: r-cran-animation
    GNU R gallery of animations and utilities to create animations
  • sug: r-cran-rcolorbrewer
    GNU R package providing suitable color palettes
  • sug: r-cran-rgl
    GNU R package for three-dimensional visualisation using OpenGL

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