Paket: grabix (0.1.7-3)
Länkar för grabix
Trisquelresurser:
Hämta källkodspaketet grabix:
Ansvarig:
Original Maintainers:
- Debian Med Packaging Team (E-postarkiv)
- Steffen Moeller
Externa resurser:
- Hemsida [github.com]
Liknande paket:
wee tool for random access into BGZF files
In biomedical research it is increasing practice to study the genetic basis of disease. This now frequently comprises the sequencing of human sequences. The output of the machine however is redundant, and the real sequence is the best sequence to explain the redundancy. The exchange of data happens only with compressed files - to huge and redundant to perform otherwise. One should avoid uncompression whenever possible.
grabix leverages the fantastic BGZF library of the samtools package to provide random access into text files that have been compressed with bgzip. grabix creates it's own index (.gbi) of the bgzipped file. Once indexed, one can extract arbitrary lines from the file with the grab command. Or choose random lines with the, well, random command.
Andra paket besläktade med grabix
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
också ett virtuellt paket som tillhandahålls av libc6-udeb
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- dep: libgcc-s1 (>= 3.3.1)
- GCC support library
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- dep: tabix
- generic indexer for TAB-delimited genome position files
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- dep: zlib1g (>= 1:1.2.0)
- compression library - runtime
Hämta grabix
| Arkitektur | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|
| amd64 | 15,5 kbyte | 56 kbyte | [filförteckning] |